HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:82.9 nTPM
HPA Brain:134.6 nTPM
GTEx:82.9 nTPM
FANTOM5:51.2 Scaled Tags Per Million
Pig:77.8 nTPM
Mouse:350.8 nTPM
Allen mouse:13.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA025735Antibody HPA025762
Glial cells MediumLow
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 134.6
Sample id Sample description nTPM
Hippocampus
nTPM: 93.9
1898 Male, age 80, left hemisphere 138.5
2621 Female, age 67, right hemisphere 108.3
2148 Female, age 91, left hemisphere 98.4
1855 Male, age 76, left hemisphere 94.7
1911 Female, age 85, right hemisphere 65.0
2529 Female, age 94, left hemisphere 58.4
Dentate gyrus
nTPM: 111.2
1927 Female, age 91, both hemispheres 157.0
2530 Female, age 94, left hemisphere 134.3
2010 Male, age 76, both hemispheres 112.1
2528 Male, age 74, both hemispheres 91.3
2246 Female, age 85, both hemispheres 89.9
2531 Female, age 67, both hemispheres 82.5
Entorhinal gyrus
nTPM: 89.3
2764 Male, age 80, right hemisphere 125.4
2613 Female, age 94, left hemisphere 105.0
1938 Female, age 85, left hemisphere 96.5
1787 Male, age 76, left hemisphere 84.3
2686 Male, age 75, right hemisphere 66.2
2117 Female, age 91, right hemisphere 58.4
Hippocampus, CA1
nTPM: 118.9
2749 Male, age 80, left hemisphere 206.6
1873 Female, age 85, both hemispheres 114.2
2527 Male, age 74, both hemispheres 103.2
2082 Female, age 91, right hemisphere 91.5
2045 Male, age 76, both hemispheres 79.0
Hippocampus, CA2
nTPM: 105.2
1963 Male, age 80, left hemisphere 147.1
1892 Male, age 76, both hemispheres 121.1
2437 Female, age 94, left hemisphere 102.9
2249 Male, age 74, both hemispheres 94.9
1940 Female, age 85, left hemisphere 85.0
2113 Female, age 91, right hemisphere 80.1
Hippocampus, CA3
nTPM: 98.8
2137 Male, age 80, left hemisphere 121.2
2861 Female, age 67, both hemispheres 117.4
2620 Female, age 94, left hemisphere 110.5
1867 Male, age 76, both hemispheres 90.4
2436 Male, age 74, both hemispheres 90.0
1891 Female, age 85, both hemispheres 63.3
Parahippocampal cortex
nTPM: 100.3
2245 Female, age 91, both hemispheres 134.5
1850 Male, age 80, both hemispheres 119.0
1990 Female, age 91, right hemisphere 114.6
1933 Female, age 85, both hemispheres 113.1
2622 Female, age 67, right hemisphere 105.9
2250 Female, age 67, right hemisphere 99.5
2693 Female, age 94, both hemispheres 96.4
2532 Female, age 72, left hemisphere 91.8
2018 Male, age 76, both hemispheres 74.4
2692 Male, age 74, both hemispheres 54.2
Perirhinal gyrus
nTPM: 134.6
1847 Female, age 91, left hemisphere 192.0
1794 Male, age 80, right hemisphere 144.6
2521 Female, age 94, right hemisphere 137.9
1841 Female, age 85, right hemisphere 113.5
2848 Male, age 76, right hemisphere 85.2
Subiculum
nTPM: 74.4
1977 Female, age 85, both hemispheres 97.9
1901 Male, age 80, both hemispheres 89.3
2438 Female, age 94, left hemisphere 73.5
2619 Male, age 74, both hemispheres 69.8
2729 Female, age 91, right hemisphere 61.2
2042 Male, age 76, both hemispheres 55.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 82.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 82.9
Samples: 197

Max nTPM: 269.4
Min nTPM: 12.1
Std nTPM: 52.9
Median nTPM: 69.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 269.4
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 256.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 241.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 238.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 234.0
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 207.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 205.6
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 200.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 197.4
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 176.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 168.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 51.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 51.2
FF:10169-103B7 60 years, female 71.6
FF:10153-102I9 76 years, female 30.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 77.8
Pig sample Sample description nTPM
Subiculum
nTPM: 64.1
Samples: 4

Max nTPM: 79.0
Min nTPM: 56.8
Sample A Female 79.0
Sample B Female 56.8
Sample C Male 59.6
Sample D Male 60.8
Dorsal hippocampus
nTPM: 75.5
Samples: 4

Max nTPM: 99.9
Min nTPM: 55.2
Sample A Female 99.9
Sample B Female 83.4
Sample C Male 63.4
Sample D Male 55.2
Entorhinal cortex
nTPM: 69.7
Samples: 4

Max nTPM: 78.7
Min nTPM: 63.7
Sample A Female 78.7
Sample B Female 69.8
Sample C Male 66.4
Sample D Male 63.7
Ventral hippocampus
nTPM: 77.8
Samples: 4

Max nTPM: 99.0
Min nTPM: 48.1
Sample A Female 90.2
Sample B Female 48.1
Sample C Male 99.0
Sample D Male 74.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 350.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 324.5
Samples: 4

Max nTPM: 378.3
Min nTPM: 282.8
Sample A Male 282.8
Sample B Male 296.0
Sample C Female 340.8
Sample D Female 378.3
Hippocampal formation
nTPM: 350.8
Samples: 4

Max nTPM: 365.7
Min nTPM: 323.1
Sample A Male 358.4
Sample B Male 323.1
Sample C Female 356.1
Sample D Female 365.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 13.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.5
146 Antisense, RP_040315_01_11, Mouse strain C57BL/6J (56 days, male) 13.5
145 Antisense, RP_040315_01_11, Mouse strain C57BL/6J (56 days, male) 13.3

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