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  • LGALS1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:372.7 nTPM
HPA Brain:221.5 nTPM
GTEx:372.7 nTPM
FANTOM5:122.9 Scaled Tags Per Million
Pig:126.5 nTPM
Mouse:39.8 nTPM
Allen mouse:0.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

221.5
Sample id Sample description nTPM
Amygdala
nTPM: 221.5
2814 Male, age 76, right hemisphere 261.1
2695 Female, age 67, right hemisphere 236.5
1987 Female, age 91, left hemisphere 227.0
2514 Male, age 75, right hemisphere 211.4
2517 Female, age 94, left hemisphere 171.4
Basal amygdala
nTPM: 153.4
1955 Male, age 76, both hemispheres 208.0
2609 Male, age 75, right hemisphere 203.4
2243 Female, age 91, right hemisphere 140.7
2110 Male, age 80, left hemisphere 134.8
2685 Female, age 94, left hemisphere 120.9
2827 Female, age 67, right hemisphere 112.3
Central amygdala
nTPM: 204.3
1905 Male, age 76, both hemispheres 262.7
2515 Male, age 75, right hemisphere 250.3
2826 Female, age 94, left hemisphere 240.3
2701 Female, age 91, right hemisphere 137.8
2239 Male, age 80, left hemisphere 130.6
Corticomedial amygdala
nTPM: 153.2
2428 Male, age 75, right hemisphere 217.1
2240 Male, age 76, both hemispheres 184.6
2242 Female, age 91, right hemisphere 155.1
2429 Female, age 94, left hemisphere 140.3
2829 Male, age 80, left hemisphere 123.6
2535 Female, age 67, right hemisphere 98.7
Lateral amygdala
nTPM: 199.1
1883 Male, age 76, both hemispheres 316.0
2516 Male, age 75, right hemisphere 224.9
2534 Female, age 94, left hemisphere 205.2
2256 Male, age 80, left hemisphere 163.9
2830 Female, age 67, right hemisphere 144.0
2255 Female, age 91, right hemisphere 140.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

372.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 372.7
Samples: 152

Max nTPM: 1067.0
Min nTPM: 128.5
Std nTPM: 154.3
Median nTPM: 343.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1067.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 900.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 819.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 797.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 764.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 750.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 731.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 691.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 665.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 663.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 646.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 612.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 607.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 577.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 571.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 571.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 562.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 527.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 524.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 507.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 503.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 502.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 502.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 486.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 478.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 474.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 474.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 472.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 471.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 467.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 457.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 454.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 453.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 452.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 451.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 451.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 444.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 440.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 433.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 433.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 432.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 431.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 425.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 412.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 411.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 410.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 410.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 408.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 406.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 404.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 404.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 402.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 393.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 392.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 387.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 383.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 380.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 375.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 374.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 373.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 372.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 370.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 369.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 368.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 368.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 367.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 366.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 362.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 361.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 355.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 354.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 352.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 351.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 346.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 344.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 343.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 343.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 342.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 341.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 339.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 339.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 338.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 336.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 335.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 335.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 335.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 332.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 330.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 328.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 328.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 321.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 321.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 320.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 318.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 317.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 316.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 316.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 315.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 312.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 309.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 309.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 307.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 303.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 297.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 296.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 296.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 294.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 291.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 288.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 281.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 281.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 273.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 270.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 263.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 263.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 263.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 261.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 257.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 257.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 253.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 246.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 244.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 243.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 241.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 238.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 234.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 233.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 232.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 225.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 220.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 220.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 219.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 218.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 216.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 214.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 212.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 207.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 205.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 205.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 203.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 201.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 200.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 191.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 190.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 174.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 172.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 170.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 164.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 155.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 153.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 142.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 128.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

122.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 122.9
FF:10151-102I7 76 years, female 122.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.5
Pig sample Sample description nTPM
Amygdala
nTPM: 126.5
Samples: 4

Max nTPM: 141.2
Min nTPM: 104.3
Sample A Female 104.3
Sample B Female 141.2
Sample C Male 140.2
Sample D Male 120.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 39.9
Samples: 4

Max nTPM: 41.9
Min nTPM: 38.8
Sample A Male 38.8
Sample B Male 39.8
Sample C Female 38.9
Sample D Female 41.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.7
75651181 Antisense, RP_060518_01_C07, Mouse strain C57BL/6J (56 days, male) 1.0
70634417 Antisense, RP_050725_01_F12, Mouse strain C57BL/6J (56 days, male) 0.7
79749622 Antisense, RP_071204_02_D11, Mouse strain C57BL/6J (56 days, male) 0.3

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