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  • LGALS1
BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:684.1 nTPM
FANTOM5:348.0 Scaled Tags Per Million
Pig:782.0 nTPM
Allen mouse:1.5 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

684.1
Sample id Sample description nTPM
Area postrema
nTPM: 427.1
2799 Male, age 61, both hemispheres 538.4
2306 Male, age 80, both hemispheres 427.1
2054 Male, age 76, both hemispheres 315.7
Dorsal medullary reticular nucleus
nTPM: 392.9
2040 Female, age 85, both hemispheres 545.6
2088 Male, age 76, both hemispheres 334.7
2373 Male, age 61, both hemispheres 298.4
Dorsal motor vagal complex
nTPM: 376.8
2000 Male, age 74, unknown 599.9
2844 Male, age 55, unknown 553.7
2133 Female, age 91, both hemispheres 549.3
2185 Male, age 76, both hemispheres 304.7
2813 Female, age 72, unknown 283.9
2797 Male, age 61, both hemispheres 255.2
2643 Male, age 74, both hemispheres 240.8
2807 Female, age 85, both hemispheres 226.7
Gigantocellular reticular nuclei, medullary
nTPM: 366.1
2314 Male, age 61, both hemispheres 545.0
2310 Male, age 80, both hemispheres 414.5
2462 Male, age 74, both hemispheres 370.4
1876 Female, age 85, both hemispheres 342.9
2387 Female, age 91, both hemispheres 302.9
2022 Male, age 76, right hemisphere 221.0
Gigantocellular reticular nuclei, pars
nTPM: 399.4
2168 Male, age 76, both hemispheres 458.8
2084 Female, age 85, both hemispheres 418.3
2706 Male, age 80, both hemispheres 381.7
2330 Male, age 80, both hemispheres 370.5
2336 Male, age 61, both hemispheres 367.6
Inferior olive
nTPM: 484.1
2563 Male, age 74, both hemispheres 612.7
2085 Female, age 85, both hemispheres 532.2
2178 Male, age 61, both hemispheres 492.5
2379 Male, age 80, both hemispheres 419.2
2628 Female, age 91, both hemispheres 363.8
Lateral medullary reticular nucleus
nTPM: 565.2
2305 Male, age 74, both hemispheres 758.2
2852 Male, age 80, both hemispheres 602.3
2044 Male, age 76, both hemispheres 583.1
2804 Female, age 91, both hemispheres 510.9
2190 Female, age 85, both hemispheres 500.6
2374 Male, age 61, both hemispheres 436.1
Medial olivary nucleus
nTPM: 595.1
1962 Male, age 76, both hemispheres 899.7
1943 Male, age 61, both hemispheres 562.5
2138 Female, age 91, both hemispheres 461.5
2851 Male, age 80, both hemispheres 456.7
Medial vestibular nucleus
nTPM: 524.6
2801 Male, age 74, both hemispheres 695.6
2134 Male, age 76, both hemispheres 651.4
2624 Male, age 61, both hemispheres 488.1
2743 Female, age 85, both hemispheres 484.9
2093 Male, age 80, both hemispheres 444.2
2803 Female, age 91, both hemispheres 383.4
Motor hypoglossal nucleus
nTPM: 451.6
2125 Female, age 91, both hemispheres 557.8
2182 Male, age 80, both hemispheres 537.3
2132 Female, age 85, both hemispheres 438.6
2277 Male, age 76, both hemispheres 380.0
2461 Male, age 61, both hemispheres 344.5
Nucleus ambiguus
nTPM: 502.0
2071 Male, age 76, both hemispheres 618.8
2096 Female, age 85, both hemispheres 385.1
Nucleus cuneatus
nTPM: 435.8
2808 Female, age 85, both hemispheres 552.2
2380 Male, age 80, both hemispheres 513.1
2564 Male, age 74, both hemispheres 509.7
2131 Male, age 76, both hemispheres 492.9
2100 Male, age 76, both hemispheres 461.9
2381 Male, age 80, both hemispheres 452.7
2376 Male, age 61, both hemispheres 431.8
2805 Female, age 91, both hemispheres 265.6
2562 Male, age 61, both hemispheres 242.0
Nucleus gracilis
nTPM: 416.2
2627 Male, age 74, both hemispheres 521.6
2382 Male, age 80, both hemispheres 456.5
2299 Female, age 85, both hemispheres 270.4
Nucleus raphe obscurus
nTPM: 617.1
2845 Female, age 85, midline 684.3
2142 Male, age 76, midline 655.0
2800 Male, age 61, midline 512.0
Nucleus raphe pallidus
nTPM: 684.1
1924 Male, age 61, midline 793.9
2145 Male, age 76, midline 694.5
2183 Male, age 80, midline 563.8
Nucleus tractus solitarii
nTPM: 305.7
2191 Female, age 85, both hemispheres 376.3
2144 Female, age 91, right hemisphere 317.5
2307 Male, age 80, both hemispheres 311.6
2656 Male, age 76, both hemispheres 217.4
Parvicellular reticular nuclei
nTPM: 490.1
2119 Male, age 80, both hemispheres 627.0
2095 Male, age 76, both hemispheres 546.7
2558 Male, age 74, both hemispheres 296.7
Parvicellular reticular nuclei, medullary
nTPM: 425.0
2091 Female, age 85, both hemispheres 546.3
2189 Female, age 91, both hemispheres 434.8
2181 Male, age 80, left hemisphere 293.9
Peritrigeminal nucleus
nTPM: 607.5
2136 Male, age 76, both hemispheres 694.5
2067 Female, age 85, both hemispheres 664.8
2179 Male, age 61, both hemispheres 463.2
Prepositus hypoglossal nucleus
nTPM: 504.6
2855 Female, age 85, right hemisphere 663.9
2086 Male, age 80, both hemispheres 345.4
Spinal trigeminal nucleus, caudal
nTPM: 451.1
2390 Female, age 91, both hemispheres 597.0
2447 Male, age 76, both hemispheres 505.1
2308 Male, age 80, both hemispheres 431.6
2312 Male, age 61, both hemispheres 409.6
2642 Male, age 74, both hemispheres 312.2
Spinal trigeminal nucleus, interpolar
nTPM: 517.7
2066 Male, age 76, right hemisphere 785.4
2625 Male, age 61, both hemispheres 778.2
2033 Male, age 80, both hemispheres 444.9
2389 Female, age 91, both hemispheres 296.0
2386 Female, age 85, both hemispheres 284.0
Spinal vestibular nucleus
nTPM: 387.7
2748 Male, age 76, both hemispheres 433.5
2780 Male, age 80, both hemispheres 409.3
2384 Male, age 74, both hemispheres 404.5
2806 Female, age 85, both hemispheres 382.3
2186 Female, age 91, both hemispheres 348.9
2796 Male, age 61, both hemispheres 347.5
Superior vestibular nucleus
nTPM: 450.0
2015 Male, age 80, both hemispheres 516.9
2061 Male, age 76, both hemispheres 418.6
2383 Male, age 74, both hemispheres 414.5
Ventral medullary reticular nucleus
nTPM: 397.3
2372 Male, age 61, both hemispheres 416.7
2060 Male, age 76, both hemispheres 377.9
Ventrolateral medulla, A1-C1 cell groups
nTPM: 509.6
1986 Male, age 76, both hemispheres 628.7
2741 Female, age 85, both hemispheres 569.4
2118 Male, age 80, both hemispheres 482.5
2180 Male, age 61, both hemispheres 473.1
2302 Female, age 91, both hemispheres 394.3

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

348.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 348.0
FF:10174-103C3 60 years, female 454.0
FF:10038-101F2 18-64 years, mixed 333.6
FF:10155-103A2 76 years, female 256.3

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

782.0
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 782.0
Samples: 4

Max nTPM: 1388.4
Min nTPM: 471.6
Sample A Female 471.6
Sample B Female 573.9
Sample C Male 694.2
Sample D Male 1388.4

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.5
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 1.5
70634417 Antisense, RP_050725_01_F12, Mouse strain C57BL/6J (56 days, male) 1.9
75651181 Antisense, RP_060518_01_C07, Mouse strain C57BL/6J (56 days, male) 1.5
79749622 Antisense, RP_071204_02_D11, Mouse strain C57BL/6J (56 days, male) 1.1

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