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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
553.9
nTPM
FANTOM5:
401.4
Scaled Tags Per Million
Pig:
627.8
nTPM
Allen mouse:
0.7
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
553.9
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 425.9
2090
Male, age 80, both hemispheres
482.9
2301
Female, age 85, both hemispheres
455.8
1984
Male, age 76, both hemispheres
403.1
2188
Female, age 91, both hemispheres
361.6
Dorsal cochlear nucleus nTPM: 355.9
2187
Female, age 91, both hemispheres
463.9
2370
Male, age 61, both hemispheres
344.0
2058
Male, age 76, both hemispheres
327.4
2802
Male, age 74, right hemisphere
326.9
2378
Male, age 80, both hemispheres
317.2
Dorsal tegmental nucleus nTPM: 399.8
2358
Male, age 61, both hemispheres
471.1
2083
Male, age 80, both hemispheres
398.6
2326
Male, age 74, both hemispheres
389.5
1936
Male, age 76, left hemisphere
339.8
Dorsolateral tegmental area nTPM: 412.4
2337
Male, age 61, both hemispheres
671.6
2751
Female, age 85, both hemispheres
430.5
2654
Male, age 80, both hemispheres
397.8
2360
Male, age 74, both hemispheres
323.7
2141
Male, age 76, both hemispheres
238.4
Kolliker-Fuse nucleus nTPM: 478.5
2163
Male, age 80, both hemispheres
700.8
2315
Male, age 76, right hemisphere
427.0
2793
Female, age 91, left hemisphere
307.6
Lateral lemniscal nuclei nTPM: 385.7
2169
Male, age 76, both hemispheres
461.7
2746
Female, age 85, left hemisphere
419.2
2036
Male, age 80, both hemispheres
416.6
2453
Male, age 74, right hemisphere
356.5
2320
Female, age 91, left hemisphere
274.3
Lateral parabrachial nucleus nTPM: 367.0
2013
Male, age 80, both hemispheres
414.2
2139
Female, age 85, right hemisphere
390.8
2790
Male, age 61, both hemispheres
334.4
2792
Male, age 76, both hemispheres
328.6
Lateral vestibular nucleus nTPM: 553.9
2184
Male, age 76, both hemispheres
642.6
2311
Male, age 80, both hemispheres
465.3
Locus coeruleus nTPM: 457.4
2123
Female, age 91, both hemispheres
712.7
2014
Male, age 55, unknown
559.0
1980
Male, age 76, both hemispheres
518.2
2788
Male, age 74, unknown
362.4
2317
Female, age 72, unknown
355.8
2720
Male, age 74, both hemispheres
350.8
2162
Male, age 80, both hemispheres
343.1
Medial parabrachial nucleus nTPM: 440.5
2170
Female, age 91, both hemispheres
660.1
2854
Male, age 80, both hemispheres
467.4
2463
Female, age 85, right hemisphere
387.1
2156
Male, age 61, both hemispheres
362.1
2786
Male, age 76, both hemispheres
326.0
Medial periolivary nuclei nTPM: 434.3
2063
Male, age 76, both hemispheres
553.6
2081
Male, age 80, both hemispheres
477.8
2171
Female, age 85, both hemispheres
428.5
2791
Male, age 74, right hemisphere
410.5
2458
Female, age 91, both hemispheres
301.1
Motor facial nucleus nTPM: 394.5
2062
Male, age 76, both hemispheres
588.9
2365
Male, age 74, right hemisphere
424.7
2126
Male, age 61, both hemispheres
417.7
2327
Male, age 80, both hemispheres
362.0
2697
Female, age 85, both hemispheres
293.3
2795
Female, age 91, both hemispheres
280.7
Motor trigeminal nucleus nTPM: 377.7
2079
Male, age 80, both hemispheres
414.9
2560
Male, age 74, both hemispheres
397.2
2321
Female, age 91, both hemispheres
389.6
2335
Male, age 61, both hemispheres
373.9
2309
Male, age 76, both hemispheres
313.0
Nuclei of the trapezoid body nTPM: 441.1
1983
Male, age 76, both hemispheres
578.9
2166
Male, age 80, both hemispheres
477.9
2159
Male, age 61, both hemispheres
437.9
2735
Female, age 85, both hemispheres
432.5
2368
Female, age 91, both hemispheres
278.2
Nucleus raphe magnus nTPM: 422.4
2051
Male, age 76, both hemispheres
561.8
2160
Male, age 61, both hemispheres
448.1
2455
Male, age 74, both hemispheres
420.3
2328
Male, age 80, both hemispheres
416.3
2172
Female, age 85, both hemispheres
406.7
2459
Female, age 91, both hemispheres
281.1
Paramedian reticular nucleus nTPM: 476.7
2057
Male, age 80, both hemispheres
550.5
2050
Female, age 85, both hemispheres
499.1
2052
Male, age 76, both hemispheres
462.4
2313
Male, age 61, both hemispheres
394.6
Pedunculopontine tegmental nucleus nTPM: 420.5
2338
Male, age 61, both hemispheres
551.3
2334
Male, age 80, both hemispheres
434.9
1921
Female, age 85, both hemispheres
275.4
Pontine nuclei nTPM: 492.6
1863
Male, age 55, unknown
688.3
2109
Female, age 72, unknown
620.5
1968
Male, age 76, left hemisphere
477.8
2115
Male, age 80, left hemisphere
470.6
2454
Male, age 74, left hemisphere
465.5
2727
Male, age 61, right hemisphere
455.1
2787
Female, age 85, both hemispheres
414.3
2319
Female, age 91, both hemispheres
348.8
Pontine raphe nucleus nTPM: 310.2
2122
Female, age 85, midline
385.5
2853
Male, age 76, midline
234.8
Posteroventral cochlear nucleus nTPM: 387.8
2341
Male, age 80, both hemispheres
482.4
2070
Male, age 76, both hemispheres
423.8
2371
Male, age 61, both hemispheres
373.6
2752
Female, age 85, both hemispheres
369.7
2135
Female, age 91, both hemispheres
289.5
Principal sensory trigeminal nucleus nTPM: 446.5
2324
Male, age 76, both hemispheres
537.5
2158
Male, age 61, both hemispheres
447.7
2008
Male, age 80, left hemisphere
447.6
2367
Female, age 91, left hemisphere
353.3
Reticular pontine nucleus, caudal nTPM: 410.6
2092
Male, age 76, both hemispheres
474.5
2559
Male, age 74, both hemispheres
464.1
2332
Male, age 80, right hemisphere
381.8
2457
Female, age 91, both hemispheres
321.9
Reticular pontine nucleus, oral nTPM: 412.5
2361
Male, age 74, both hemispheres
638.8
2012
Female, age 85, both hemispheres
419.8
1939
Male, age 80, both hemispheres
416.8
2167
Male, age 76, both hemispheres
357.8
2366
Female, age 91, both hemispheres
229.3
Reticulotegmental nucleus nTPM: 375.5
2322
Female, age 91, both hemispheres
385.7
2333
Male, age 80, both hemispheres
385.0
2325
Male, age 76, both hemispheres
377.8
2452
Male, age 74, both hemispheres
353.5
Spinal trigeminal nucleus, oral nTPM: 440.7
2164
Male, age 80, both hemispheres
617.2
2737
Female, age 85, both hemispheres
425.2
1978
Male, age 76, both hemispheres
279.7
Subcoeruleus area nTPM: 361.5
1958
Male, age 80, both hemispheres
435.3
2369
Female, age 85, left hemisphere
364.0
2089
Male, age 76, left hemisphere
361.4
2323
Female, age 91, left hemisphere
349.4
2451
Male, age 74, both hemispheres
297.5
Superior olive nTPM: 396.2
2364
Male, age 74, right hemisphere
466.1
2020
Male, age 76, both hemispheres
439.2
2329
Male, age 80, right hemisphere
420.6
1875
Female, age 85, both hemispheres
353.8
2561
Female, age 91, both hemispheres
301.2
Ventral periolivary nuclei nTPM: 410.8
2165
Male, age 80, both hemispheres
520.4
2130
Female, age 85, both hemispheres
424.5
2023
Male, age 76, both hemispheres
402.0
2794
Female, age 91, left hemisphere
296.6
Ventrolateral tegmental area, A5 NE cell group nTPM: 399.6
2161
Male, age 80, both hemispheres
471.2
1959
Male, age 76, both hemispheres
441.5
2449
Male, age 74, both hemispheres
400.8
2359
Male, age 61, both hemispheres
398.8
2840
Female, age 85, both hemispheres
398.7
2456
Female, age 91, both hemispheres
286.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
627.8
Pig sample
Sample description
nTPM
Pons nTPM: 627.8
Samples: 4
Max nTPM: 822.0
Min nTPM: 347.2
Sample A
Female
347.2
Sample B
Female
611.7
Sample C
Male
822.0
Sample D
Male
730.1
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
