We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
LGALS1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • LGALS1
BRAIN BASAL GANGLIA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Basal ganglia
BASAL GANGLIA - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:382.4 nTPM
HPA Brain:294.0 nTPM
GTEx:382.4 nTPM
FANTOM5:186.5 Scaled Tags Per Million
Pig:215.5 nTPM
Mouse:38.6 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA000646Antibody CAB002157
Glial cells LowLow
Neuronal cells Medium-




BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

294.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 173.0
2481 Female, age 94, left hemisphere 299.1
1857 Female, age 85, left hemisphere 179.9
1854 Male, age 80, left hemisphere 171.1
2288 Male, age 75, left hemisphere 167.8
1781 Male, age 74, unknown 158.3
2289 Male, age 61, right hemisphere 151.2
2290 Female, age 72, unknown 144.8
2846 Female, age 79, unknown 111.6
Globus pallidus, externus
nTPM: 260.0
1996 Male, age 80, right hemisphere 347.8
2772 Female, age 79, unknown 345.9
2395 Male, age 75, both hemispheres 264.2
2646 Male, age 61, right hemisphere 203.3
2567 Female, age 72, unknown 138.8
Globus pallidus, internus
nTPM: 294.0
1818 Male, age 74, unknown 375.3
2483 Female, age 94, right hemisphere 323.9
2287 Male, age 75, right hemisphere 323.2
2778 Female, age 91, both hemispheres 318.9
2037 Male, age 80, right hemisphere 296.6
2111 Female, age 85, right hemisphere 226.3
2566 Female, age 72, unknown 193.9
Nucleus accumbens
nTPM: 149.4
2286 Male, age 75, left hemisphere 216.9
2391 Female, age 94, left hemisphere 189.6
1806 Female, age 85, left hemisphere 187.6
2732 Male, age 80, right hemisphere 142.2
1856 Female, age 91, right hemisphere 129.1
2698 Female, age 72, unknown 114.6
1783 Male, age 74, unknown 112.3
2824 Male, age 61, right hemisphere 103.3
Nucleus basalis of Meynert
nTPM: 193.7
2569 Male, age 61, both hemispheres 215.2
2821 Male, age 75, both hemispheres 204.7
2484 Female, age 94, left hemisphere 198.9
2393 Male, age 80, right hemisphere 155.8
Nucleus of the diagonal band
nTPM: 152.2
1812 Female, age 91, both hemispheres 214.9
2775 Male, age 80, right hemisphere 171.9
2029 Male, age 61, right hemisphere 157.0
2195 Female, age 85, both hemispheres 120.0
1979 Male, age 74, unknown 97.3
Putamen
nTPM: 150.4
2482 Female, age 94, left hemisphere 266.1
2647 Male, age 75, left hemisphere 164.5
1937 Female, age 91, right hemisphere 152.2
2489 Female, age 72, unknown 136.7
2466 Female, age 79, unknown 123.0
1838 Male, age 80, right hemisphere 122.6
1829 Male, age 74, unknown 87.7
Septal nuclei
nTPM: 152.5
2031 Female, age 72, unknown 190.1
2394 Male, age 61, left hemisphere 173.6
2199 Male, age 80, right hemisphere 155.6
2009 Female, age 91, both hemispheres 146.4
2059 Female, age 85, both hemispheres 144.3
1960 Male, age 74, unknown 130.2
2629 Female, age 94, right hemisphere 127.2
Stria terminalis, bed nucleus
nTPM: 148.3
1974 Female, age 91, both hemispheres 195.2
2201 Male, age 74, unknown 126.0
2486 Female, age 94, both hemispheres 123.8

BASAL GANGLIA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

382.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 341.0
Samples: 246

Max nTPM: 1416.6
Min nTPM: 82.1
Std nTPM: 160.0
Median nTPM: 310.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1416.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 845.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 795.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 770.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 740.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 717.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 696.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 695.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 645.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 636.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 634.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 631.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 612.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 608.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 607.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 607.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 587.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 584.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 577.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 573.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 571.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 548.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 537.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 534.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 531.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 526.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 520.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 520.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 514.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 511.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 509.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 493.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 492.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 492.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 492.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 490.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 490.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 487.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 482.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 481.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 480.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 479.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 477.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 477.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 474.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 474.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 474.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 471.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 469.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 467.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 460.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 459.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 454.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 450.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 449.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 441.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 440.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 439.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 439.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 436.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 428.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 427.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 425.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 424.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 423.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 415.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 412.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 409.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 406.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 406.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 403.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 399.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 398.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 397.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 397.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 392.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 392.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 389.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 389.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 388.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 386.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 384.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 382.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 381.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 380.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 379.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 378.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 378.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 375.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 371.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 371.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 370.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 367.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 358.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 357.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 353.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 353.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 351.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 350.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 345.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 344.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 344.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 343.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 342.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 342.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 342.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 341.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 338.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 337.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 333.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 333.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 329.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 325.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 324.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 322.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 318.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 318.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 318.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 317.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 315.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 314.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 313.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 312.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 308.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 302.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 301.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 300.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 299.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 298.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 297.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 297.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 296.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 296.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 294.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 290.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 289.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 288.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 287.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 286.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 284.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 280.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 279.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 279.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 279.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 276.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 275.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 275.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 272.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 272.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 271.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 271.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 269.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 268.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 266.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 266.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 261.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 260.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 260.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 259.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 259.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 258.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 258.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 256.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 256.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 256.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 255.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 255.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 255.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 255.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 253.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 253.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 250.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 249.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 248.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 247.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 246.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 246.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 245.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 244.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 240.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 238.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 238.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 237.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 233.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 233.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 233.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 225.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 223.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 219.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 217.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 217.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 216.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 216.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 214.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 208.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 208.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 207.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 206.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 206.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 205.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 203.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 203.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 201.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 201.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 200.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 198.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 189.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 188.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 187.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 185.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 183.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 180.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 180.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 178.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 176.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 175.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 175.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 173.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 172.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 172.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 171.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 171.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 170.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 169.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 169.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 169.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 168.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 167.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 165.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 164.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 164.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 163.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 148.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 145.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 144.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 143.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 142.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 141.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 141.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 139.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 130.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 123.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 101.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 100.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 91.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 82.1
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 307.3
Samples: 246

Max nTPM: 1419.1
Min nTPM: 85.9
Std nTPM: 184.6
Median nTPM: 245.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 1419.1
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 1030.1
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 903.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 901.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 901.2
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 824.5
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 789.4
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 744.1
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 729.8
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 709.5
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 693.2
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 680.3
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 679.7
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 646.9
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 642.6
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 625.6
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 620.2
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 613.5
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 612.9
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 599.1
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 581.1
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 557.9
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 554.6
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 553.0
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 549.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 543.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 542.0
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 539.8
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 539.3
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 537.1
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 525.2
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 525.0
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 510.5
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 504.0
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 500.2
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 486.7
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 478.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 471.3
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 471.1
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 470.5
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 470.2
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 469.4
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 461.5
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 447.8
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 446.3
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 432.3
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 427.7
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 414.5
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 410.5
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 406.6
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 402.3
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 396.7
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 388.9
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 388.1
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 386.4
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 384.5
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 384.5
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 384.2
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 381.1
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 381.1
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 380.1
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 379.4
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 377.1
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 372.8
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 368.8
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 365.1
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 363.8
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 357.6
GTEX-1N2DW-0011-R6a-SM-EZ6MW 50-59 years, male 357.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 356.6
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 353.0
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 348.5
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 348.2
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 347.7
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 343.6
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 337.7
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 337.1
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 336.9
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 328.1
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 328.0
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 327.0
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 321.3
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 318.9
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 318.9
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 316.5
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 314.5
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 314.0
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 313.8
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 307.3
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 303.7
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 302.1
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 301.4
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 299.9
GTEX-N7MT-0011-R6a-SM-2I3G3 60-69 years, female 295.3
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 293.4
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 291.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 283.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 282.3
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 281.8
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 276.1
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 275.6
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 270.4
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 269.1
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 268.3
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 267.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 265.1
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 264.5
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 259.7
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 259.7
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 258.4
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 258.2
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 258.1
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 258.0
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 257.7
GTEX-11NUK-0011-R6a-SM-DO93O 50-59 years, male 255.6
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 254.4
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 252.2
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 252.1
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 251.4
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 250.4
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 247.2
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 246.2
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 245.2
GTEX-ZXG5-0011-R6a-SM-57WBZ 60-69 years, male 244.8
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 242.4
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 241.7
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 241.2
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 238.5
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 238.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 237.8
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 237.4
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 236.3
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 235.3
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 234.6
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 234.3
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 234.0
GTEX-Y8DK-0011-R6A-SM-4V6EG 60-69 years, male 234.0
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 232.3
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 230.3
GTEX-1GF9V-0011-R6b-SM-CJI2Q 60-69 years, male 229.9
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 229.7
GTEX-1CB4G-0011-R6b-SM-9QEGO 60-69 years, male 228.5
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 227.4
GTEX-147GR-0011-R6b-SM-5S2RO 60-69 years, male 226.0
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 225.7
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 223.7
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 221.2
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 220.8
GTEX-1HGF4-0011-R6a-SM-A96S1 60-69 years, male 219.4
GTEX-11DXY-0011-R6a-SM-DNZZF 60-69 years, male 219.2
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 217.7
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 217.5
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 217.1
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 216.0
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 213.7
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 212.2
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 211.8
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 210.3
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 209.7
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 208.6
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 208.6
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 207.9
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 206.7
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 205.9
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 205.4
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 204.4
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 203.9
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 203.2
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 202.6
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 202.0
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 201.9
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 201.5
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 201.4
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 201.1
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 201.0
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 200.2
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 199.8
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 199.2
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 197.1
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 193.0
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 189.7
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 188.4
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 188.4
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 186.8
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 184.7
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 184.1
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 183.5
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 183.1
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 182.3
GTEX-1H1CY-0011-R6b-SM-CE6RP 60-69 years, female 182.0
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 180.4
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 179.2
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 176.4
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 176.3
GTEX-14JG1-0011-R6b-SM-5YYAU 40-49 years, male 176.0
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 174.9
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 174.0
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 172.7
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 171.7
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 167.7
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 164.7
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 164.7
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 163.9
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 163.8
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 162.5
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 159.8
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 159.7
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 155.8
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 155.2
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 153.5
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 152.6
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 151.2
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 150.7
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 150.3
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 150.1
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 148.7
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 148.5
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 148.0
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 146.6
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 146.6
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 144.9
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 144.0
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 143.8
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 139.5
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 139.4
GTEX-14ABY-0011-R6a-SM-5PNWR 50-59 years, male 139.3
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 136.9
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 136.4
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 136.4
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 136.3
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 135.1
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 133.3
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 131.8
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 130.3
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 128.2
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 127.0
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 125.0
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 123.9
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 123.4
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 118.0
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 117.3
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 115.2
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 104.0
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 97.6
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 95.1
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 85.9
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 382.4
Samples: 205

Max nTPM: 854.2
Min nTPM: 95.1
Std nTPM: 165.6
Median nTPM: 351.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 854.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 848.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 781.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 778.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 742.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 737.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 729.5
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 718.9
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 716.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 711.3
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 707.7
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 706.2
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 693.5
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 692.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 688.1
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 679.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 672.5
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 665.1
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 654.5
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 652.0
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 648.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 638.5
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 636.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 633.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 627.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 611.3
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 600.9
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 600.0
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 597.0
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 591.1
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 590.1
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 584.6
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 579.6
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 570.4
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 552.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 551.6
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 549.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 548.1
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 542.4
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 541.6
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 538.1
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 537.7
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 534.0
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 531.6
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 529.2
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 523.2
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 515.9
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 513.3
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 504.9
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 495.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 483.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 476.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 472.5
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 470.0
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 439.0
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 438.0
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 433.3
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 431.1
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 430.4
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 428.0
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 427.5
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 426.0
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 420.6
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 418.4
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 418.1
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 414.4
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 413.4
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 412.3
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 412.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 407.3
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 406.7
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 404.5
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 403.7
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 403.1
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 403.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 402.9
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 399.7
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 396.6
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 396.3
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 394.6
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 393.1
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 392.9
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 388.4
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 388.3
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 387.5
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 387.1
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 386.3
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 382.9
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 382.4
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 379.4
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 378.7
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 378.6
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 378.5
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 375.0
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 371.1
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 365.8
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 364.6
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 364.0
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 359.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 355.1
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 353.3
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 352.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 351.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 350.1
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 349.2
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 344.2
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 343.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 342.5
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 339.8
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 334.0
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 329.7
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 329.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 328.5
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 327.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 325.9
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 324.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 324.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 323.2
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 322.6
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 321.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 321.1
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 320.2
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 317.6
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 314.9
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 311.8
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 308.2
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 308.2
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 306.6
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 301.9
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 301.5
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 301.3
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 299.1
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 294.7
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 293.5
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 286.1
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 283.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 279.6
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 278.4
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 278.1
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 277.5
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 275.9
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 275.8
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 275.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 272.4
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 272.0
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 271.5
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 270.3
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 269.8
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 268.8
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 268.7
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 261.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 257.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 256.0
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 254.1
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 253.9
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 252.5
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 252.1
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 251.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 249.8
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 243.0
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 239.8
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 236.8
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 236.4
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 235.8
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 235.0
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 227.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 224.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 224.8
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 221.8
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 217.7
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 217.5
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 215.4
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 213.9
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 212.0
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 210.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 210.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 210.7
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 207.4
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 207.2
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 205.7
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 203.5
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 201.7
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 200.6
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 200.3
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 198.9
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 198.8
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 192.5
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 191.7
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 189.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 187.0
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 184.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 184.1
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 180.9
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 179.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 176.1
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 176.1
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 170.9
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 165.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 163.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 163.0
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 159.3
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 154.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 121.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 107.2
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 95.1
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

186.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 116.2
FF:10164-103B2 76 years, female 116.2
Nucleus accumbens
Scaled Tags Per Million: 102.6
FF:10037-101F1 23-56 years, mixed 102.6
Putamen
Scaled Tags Per Million: 89.5
FF:10176-103C5 60 years, female 89.5
Globus pallidus
Scaled Tags Per Million: 186.5
FF:10175-103C4 60 years, female 212.6
FF:10161-103A8 76 years, female 160.4

BASAL GANGLIA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

215.5
Pig sample Sample description nTPM
Caudate
nTPM: 38.3
Samples: 4

Max nTPM: 47.4
Min nTPM: 29.5
Sample A Female 42.9
Sample B Female 47.4
Sample C Male 29.5
Sample D Male 33.2
Putamen
nTPM: 55.9
Samples: 4

Max nTPM: 67.2
Min nTPM: 38.9
Sample A Female 58.4
Sample B Female 38.9
Sample C Male 67.2
Sample D Male 59.0
Septum
nTPM: 215.5
Samples: 4

Max nTPM: 615.1
Min nTPM: 46.7
Sample A Female 93.5
Sample B Female 106.8
Sample C Male 615.1
Sample D Male 46.7
Ventral pallidum
nTPM: 137.7
Samples: 4

Max nTPM: 373.3
Min nTPM: 27.7
Sample A Female 27.7
Sample B Female 102.8
Sample C Male 373.3
Sample D Male 47.1

BASAL GANGLIA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 22.2
Samples: 4

Max nTPM: 25.4
Min nTPM: 15.8
Sample A Male 22.4
Sample B Male 15.8
Sample C Female 25.1
Sample D Female 25.4
Septum
nTPM: 29.0
Samples: 4

Max nTPM: 43.2
Min nTPM: 14.9
Sample A Male 29.6
Sample B Male 28.2
Sample C Female 43.2
Sample D Female 14.9
Ventral forebrain
nTPM: 38.7
Samples: 4

Max nTPM: 54.7
Min nTPM: 30.9
Sample A Male 30.9
Sample B Male 33.8
Sample C Female 54.7
Sample D Female 35.2

BASAL GANGLIA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
70634417 Antisense, RP_050725_01_F12, Mouse strain C57BL/6J (56 days, male) 0.2
75651181 Antisense, RP_060518_01_C07, Mouse strain C57BL/6J (56 days, male) 0.2
79749622 Antisense, RP_071204_02_D11, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.1
75651181 Antisense, RP_060518_01_C07, Mouse strain C57BL/6J (56 days, male) 0.1
79749622 Antisense, RP_071204_02_D11, Mouse strain C57BL/6J (56 days, male) 0.1
70634417 Antisense, RP_050725_01_F12, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org