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CYB5R3
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:134.1 nTPM
HPA:87.9 nTPM
GTEx:134.1 nTPM
FANTOM5:196.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA001566
Glandular cells Low



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.9
overview
Male, age 65
Small intestine sample 232
nTPM: 64.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 99.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 92.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 95.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 134.1
Samples: 187

Max nTPM: 406.5
Min nTPM: 65.6
Std nTPM: 42.8
Median nTPM: 126.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 406.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 258.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 250.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 234.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 234.2
GTEX-1192X-2526-SM-59868 50-59 years, male 227.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 224.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 220.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 208.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 208.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 207.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 207.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 207.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 206.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 205.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 205.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 200.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 194.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 193.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 192.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 191.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 189.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 186.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 183.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 181.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 175.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 173.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 173.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 172.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 170.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 168.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 167.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 166.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 165.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 160.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 159.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 159.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 158.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 157.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 156.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 154.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 154.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 153.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 153.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 152.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 152.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 150.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 150.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 149.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 149.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 149.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 147.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 147.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 146.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 146.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 146.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 145.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 145.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 145.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 144.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 141.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 141.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 140.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 140.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 139.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 138.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 138.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 137.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 136.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 136.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 136.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 136.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 136.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 136.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 135.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 133.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 133.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 133.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 132.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 132.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 132.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 132.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 132.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 132.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 132.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 130.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 130.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 129.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 127.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 127.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 127.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 126.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 126.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 126.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 126.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 126.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 126.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 125.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 125.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 125.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 125.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 123.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 123.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 123.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 121.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 120.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 117.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 117.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 116.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 116.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 115.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 115.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 115.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 114.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 114.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 114.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 114.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 114.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 113.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 113.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 113.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 113.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 113.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 112.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 112.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 110.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 110.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 110.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 109.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 108.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 108.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 108.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 107.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 107.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 106.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 105.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 104.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 104.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 104.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 104.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 103.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 103.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 102.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 102.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 101.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 101.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 101.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 100.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 100.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 100.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 99.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 99.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 99.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 99.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 98.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 98.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 98.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 97.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 97.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 96.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 96.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 95.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 95.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 95.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 94.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 94.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 92.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 91.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 91.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 90.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 90.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 89.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 88.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 88.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 88.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 88.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 87.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 86.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 85.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 85.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 80.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 79.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 78.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 75.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 74.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 74.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 65.6
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

196.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 196.5
FF:10024-101D6 15,40,85 years, mixed 196.5

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