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BRAIN BASAL GANGLIA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Basal ganglia
BASAL GANGLIA - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:4419.8 nTPM
HPA Brain:2749.6 nTPM
GTEx:4419.8 nTPM
FANTOM5:2797.6 Scaled Tags Per Million
Pig:1706.2 nTPM
Mouse:3176.3 nTPM
Allen mouse:26.3 Expression energy

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA013143Antibody CAB000118
Glial cells MediumMedium
Neuronal cells Not detectedMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2749.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2749.6
1857 Female, age 85, left hemisphere 3767.8
2481 Female, age 94, left hemisphere 3508.0
2290 Female, age 72, unknown 2928.6
1854 Male, age 80, left hemisphere 2846.3
2288 Male, age 75, left hemisphere 2684.2
2289 Male, age 61, right hemisphere 2539.7
2846 Female, age 79, unknown 2031.0
1781 Male, age 74, unknown 1691.3
Globus pallidus, externus
nTPM: 2480.6
2646 Male, age 61, right hemisphere 4426.0
1996 Male, age 80, right hemisphere 3193.1
2772 Female, age 79, unknown 2161.9
2395 Male, age 75, both hemispheres 1512.2
2567 Female, age 72, unknown 1109.8
Globus pallidus, internus
nTPM: 1911.9
2483 Female, age 94, right hemisphere 2972.7
2037 Male, age 80, right hemisphere 2424.9
1818 Male, age 74, unknown 2242.4
2287 Male, age 75, right hemisphere 1889.0
2778 Female, age 91, both hemispheres 1445.2
2111 Female, age 85, right hemisphere 1288.8
2566 Female, age 72, unknown 1120.2
Nucleus accumbens
nTPM: 1921.2
1806 Female, age 85, left hemisphere 3229.9
2286 Male, age 75, left hemisphere 3045.2
2824 Male, age 61, right hemisphere 1781.8
2391 Female, age 94, left hemisphere 1729.5
1783 Male, age 74, unknown 1553.1
2698 Female, age 72, unknown 1433.0
2732 Male, age 80, right hemisphere 1401.8
1856 Female, age 91, right hemisphere 1195.4
Nucleus basalis of Meynert
nTPM: 2694.1
2569 Male, age 61, both hemispheres 5291.4
2484 Female, age 94, left hemisphere 2208.8
2821 Male, age 75, both hemispheres 1655.5
2393 Male, age 80, right hemisphere 1620.6
Nucleus of the diagonal band
nTPM: 1470.1
1979 Male, age 74, unknown 1933.3
2195 Female, age 85, both hemispheres 1561.2
2775 Male, age 80, right hemisphere 1331.6
1812 Female, age 91, both hemispheres 1330.5
2029 Male, age 61, right hemisphere 1193.7
Putamen
nTPM: 2178.3
2489 Female, age 72, unknown 2800.5
2482 Female, age 94, left hemisphere 2750.3
2647 Male, age 75, left hemisphere 2552.0
2466 Female, age 79, unknown 2145.6
1829 Male, age 74, unknown 1766.6
1937 Female, age 91, right hemisphere 1641.1
1838 Male, age 80, right hemisphere 1592.0
Septal nuclei
nTPM: 1764.7
2059 Female, age 85, both hemispheres 3167.7
2199 Male, age 80, right hemisphere 2497.7
1960 Male, age 74, unknown 1724.4
2031 Female, age 72, unknown 1410.6
2394 Male, age 61, left hemisphere 1333.3
2009 Female, age 91, both hemispheres 1141.6
2629 Female, age 94, right hemisphere 1077.8
Stria terminalis, bed nucleus
nTPM: 1121.7
2201 Male, age 74, unknown 1326.0
1974 Female, age 91, both hemispheres 1131.5
2486 Female, age 94, both hemispheres 907.7

BASAL GANGLIA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4419.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3553.4
Samples: 246

Max nTPM: 12902.0
Min nTPM: 540.4
Std nTPM: 1981.4
Median nTPM: 2996.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 12902.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 11113.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 10779.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 10155.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 9260.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 9189.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 8722.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 8536.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 8066.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 7469.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 7325.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 6941.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 6934.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 6871.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 6689.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 6618.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 6521.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 6507.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 6499.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 6452.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 6446.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 6399.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 6343.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 6175.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 6166.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 6144.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 6105.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 5996.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 5951.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 5913.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 5828.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 5783.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 5783.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 5687.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 5685.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 5613.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 5582.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 5560.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 5522.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 5467.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 5445.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 5391.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 5387.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 5291.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 5173.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 5081.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 5055.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 5038.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 5023.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 4891.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 4870.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 4858.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 4823.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 4797.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 4791.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 4768.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 4718.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 4660.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 4630.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 4614.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 4603.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 4602.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 4558.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 4554.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 4482.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 4461.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 4459.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 4458.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 4427.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 4358.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 4352.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 4317.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 4282.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 4236.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 4074.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 4053.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 3999.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 3998.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 3930.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 3900.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 3843.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 3832.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 3827.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 3798.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 3778.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 3767.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 3767.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 3722.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 3691.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 3677.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 3671.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 3667.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 3664.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 3664.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 3662.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 3648.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 3627.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 3623.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 3614.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 3578.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 3576.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 3526.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 3504.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 3490.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 3355.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 3345.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 3341.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 3322.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 3302.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 3285.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 3280.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 3257.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 3257.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 3216.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 3211.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 3207.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 3196.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 3085.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 3082.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 3070.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 3060.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 3050.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 3016.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 2977.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 2942.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 2902.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 2898.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 2892.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 2869.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 2858.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 2833.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 2831.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 2830.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 2810.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 2808.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 2802.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 2767.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 2766.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 2760.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 2756.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 2738.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 2733.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 2731.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 2713.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 2692.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 2685.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 2676.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 2661.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 2660.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 2659.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 2656.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 2654.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 2641.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 2637.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 2588.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 2585.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 2583.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 2472.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 2461.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 2459.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 2458.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 2457.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 2453.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 2444.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 2441.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 2432.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 2429.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 2424.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 2412.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 2409.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 2405.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 2402.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 2371.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 2367.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 2365.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 2364.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 2338.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 2314.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 2300.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 2240.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 2235.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 2211.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 2198.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 2185.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 2143.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 2134.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 2125.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 2092.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 2091.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 2083.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 2065.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 2048.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 2044.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 2040.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 2029.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 2024.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 2014.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 2009.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1972.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1937.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1919.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1918.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1894.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1866.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 1834.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1820.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1812.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1809.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1787.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1783.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1773.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1761.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1757.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1746.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1734.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1713.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1701.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1690.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1689.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1676.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1640.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1520.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1498.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1477.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1469.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1430.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1429.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1417.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1355.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1312.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1307.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1287.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1275.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1260.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 1205.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1179.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1157.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1154.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1153.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 1097.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1082.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 949.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 890.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 791.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 726.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 540.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2455.1
Samples: 246

Max nTPM: 13948.1
Min nTPM: 616.6
Std nTPM: 1698.5
Median nTPM: 1995.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 13948.1
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 12562.2
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 8370.7
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 6903.1
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 6864.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 6806.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 6606.2
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 6526.6
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 6425.8
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 6390.7
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 6126.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 6037.5
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 5632.7
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 5494.8
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 5363.4
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 5178.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 4819.6
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 4782.6
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 4742.3
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 4693.5
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 4672.0
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 4669.4
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 4621.9
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 4591.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 4432.1
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 4333.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 4307.1
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 4275.1
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 4225.0
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 4153.0
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 4072.1
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 4061.9
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 4060.1
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 3963.7
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 3853.0
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 3794.6
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 3671.3
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 3650.3
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 3581.7
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 3478.1
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 3470.7
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 3449.9
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 3410.8
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 3358.8
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 3317.8
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 3293.6
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 3256.5
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 3236.4
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 3216.1
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 3209.3
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 3201.4
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 3192.5
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 3170.2
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 3169.5
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 3165.7
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 3135.1
GTEX-1N2DW-0011-R6a-SM-EZ6MW 50-59 years, male 3096.5
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 3080.0
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 3065.6
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 3050.1
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 3020.8
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 3020.0
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 2974.8
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 2952.6
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 2937.3
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 2910.6
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 2896.6
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 2864.6
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 2854.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 2815.9
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 2803.5
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 2788.7
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 2780.3
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 2732.3
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 2679.6
GTEX-1GF9V-0011-R6b-SM-CJI2Q 60-69 years, male 2653.9
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 2646.5
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 2602.4
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 2600.1
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 2589.6
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 2589.2
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 2578.3
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 2573.5
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 2549.1
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 2548.4
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 2533.5
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 2530.8
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 2510.9
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 2473.7
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 2453.0
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 2390.7
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 2385.7
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 2380.5
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 2366.1
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 2361.7
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 2334.7
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 2289.4
GTEX-Y8DK-0011-R6A-SM-4V6EG 60-69 years, male 2269.9
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 2265.4
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 2234.3
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 2220.1
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 2199.5
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 2190.1
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 2182.5
GTEX-11NUK-0011-R6a-SM-DO93O 50-59 years, male 2164.6
GTEX-14ABY-0011-R6a-SM-5PNWR 50-59 years, male 2157.0
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 2151.6
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 2148.8
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 2147.6
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 2118.9
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 2105.5
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 2101.1
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 2080.7
GTEX-1HGF4-0011-R6a-SM-A96S1 60-69 years, male 2080.3
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 2076.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 2058.7
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 2055.6
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 2050.3
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 2040.7
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 2034.2
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 2027.7
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 2027.1
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 2014.0
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 1977.5
GTEX-1CB4G-0011-R6b-SM-9QEGO 60-69 years, male 1968.7
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 1947.7
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 1932.0
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 1897.2
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 1865.4
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 1863.3
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 1850.1
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 1842.9
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 1825.6
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 1820.8
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 1819.4
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 1806.1
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 1800.7
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 1790.2
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 1785.8
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 1779.9
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 1776.5
GTEX-ZXG5-0011-R6a-SM-57WBZ 60-69 years, male 1769.5
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 1767.4
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 1753.4
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 1748.8
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 1745.5
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 1738.2
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 1727.2
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 1724.7
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 1710.2
GTEX-1H1CY-0011-R6b-SM-CE6RP 60-69 years, female 1708.1
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 1704.9
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 1700.8
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 1684.3
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 1682.3
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 1663.4
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 1654.8
GTEX-14JG1-0011-R6b-SM-5YYAU 40-49 years, male 1649.8
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 1640.6
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 1630.1
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 1626.0
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 1625.2
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 1609.5
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 1605.3
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 1599.1
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 1578.6
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 1572.9
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 1569.8
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 1567.1
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 1561.5
GTEX-147GR-0011-R6b-SM-5S2RO 60-69 years, male 1552.1
GTEX-11DXY-0011-R6a-SM-DNZZF 60-69 years, male 1544.2
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 1544.2
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 1516.0
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 1515.5
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 1514.7
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 1497.2
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 1472.6
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 1455.1
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 1444.6
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 1443.9
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 1420.3
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 1407.2
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 1400.9
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 1400.3
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 1396.8
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 1380.2
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 1379.2
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 1363.1
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 1360.2
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 1348.0
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 1338.3
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 1322.1
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 1313.3
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 1307.9
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 1304.0
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 1298.4
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 1288.2
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 1275.2
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 1254.6
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 1252.1
GTEX-N7MT-0011-R6a-SM-2I3G3 60-69 years, female 1248.6
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 1238.8
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 1205.4
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 1202.2
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 1201.3
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 1198.6
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 1176.4
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 1172.2
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 1168.9
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 1151.1
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 1145.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 1139.1
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 1128.3
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 1124.8
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 1123.7
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 1105.3
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 1100.3
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 1098.7
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 1089.4
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 1085.8
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 1085.6
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 1067.4
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 1056.5
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 1040.4
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 1029.8
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 992.9
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 939.7
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 926.8
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 917.4
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 903.6
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 892.5
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 888.2
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 880.9
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 878.3
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 842.8
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 821.5
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 818.9
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 771.0
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 750.1
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 691.4
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 657.5
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 655.5
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 654.5
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 635.6
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 616.6
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Brain - Putamen (basal ganglia)
Average nTPM: 4419.8
Samples: 205

Max nTPM: 14942.0
Min nTPM: 856.3
Std nTPM: 2550.2
Median nTPM: 3838.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 14942.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 14125.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 13152.6
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 11499.4
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 11467.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 11377.2
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 11310.9
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 10805.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 10380.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 9776.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 9759.6
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 9393.7
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 9171.9
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 8808.8
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 8687.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 8130.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 8076.0
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 8004.2
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 7975.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 7959.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 7637.7
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 7526.1
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 7464.4
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 7401.2
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 7214.2
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 7211.7
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 7081.2
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 6964.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 6951.0
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 6678.3
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 6617.9
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 6599.8
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 6570.1
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 6547.0
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 6544.5
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 6313.0
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 6273.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 6231.2
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 6218.1
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 6185.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 6030.4
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 5972.8
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 5964.7
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 5963.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 5791.7
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 5777.0
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 5770.3
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 5757.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 5657.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 5650.4
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 5582.3
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 5555.3
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 5549.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 5538.1
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 5479.7
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 5430.3
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 5373.8
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 5273.0
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 5237.5
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 5152.0
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 5150.4
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 5093.6
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 5083.9
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 5067.0
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 5058.1
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 5013.6
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 5006.3
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 5004.0
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 4901.4
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 4856.1
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 4788.7
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 4784.6
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 4749.8
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 4749.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 4741.9
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 4623.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 4596.0
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 4561.2
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 4554.7
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 4538.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 4531.6
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 4527.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 4507.0
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 4493.0
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 4480.9
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 4435.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 4344.4
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 4319.3
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 4313.6
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 4295.4
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 4209.3
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 4177.8
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 4162.8
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 4155.6
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 4120.4
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 4085.0
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 4040.0
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 4018.3
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 3888.0
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 3882.5
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 3868.9
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 3849.7
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 3838.0
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 3646.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 3642.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 3640.3
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 3639.2
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 3622.0
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 3587.5
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 3580.8
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 3575.8
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 3568.5
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 3523.2
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 3514.0
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 3504.0
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 3498.7
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 3483.1
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 3466.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 3444.2
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 3431.0
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 3381.1
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 3370.1
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 3369.2
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 3365.3
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 3287.2
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 3277.0
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 3257.9
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 3256.8
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 3188.7
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 3173.7
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 3153.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 3132.8
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 3121.6
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 3121.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 3087.2
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 3074.8
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 3004.9
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 3002.4
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 2988.8
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 2943.4
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 2882.5
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 2873.1
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 2804.3
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 2798.1
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 2792.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 2764.4
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 2756.6
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 2748.9
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 2746.9
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 2741.3
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 2684.2
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 2675.3
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 2602.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 2586.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 2573.0
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 2558.3
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 2546.9
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 2492.3
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 2448.6
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 2338.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 2334.9
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 2314.5
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 2279.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 2253.3
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 2231.6
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 2214.8
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 2200.4
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 2195.8
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 2171.1
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 2169.0
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 2124.1
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 2123.8
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 2094.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 2049.0
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 2033.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 2024.5
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 2005.5
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 1982.6
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 1968.7
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 1962.1
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 1959.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 1953.1
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 1932.2
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 1893.2
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 1820.2
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 1814.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 1797.1
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 1793.9
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 1763.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 1709.9
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 1670.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 1631.4
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 1615.2
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 1537.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 1529.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 1480.7
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 1419.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 1416.5
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 1413.9
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 1393.0
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 1235.1
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 1212.8
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 1210.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 915.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 856.3
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BASAL GANGLIA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2797.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1661.7
FF:10164-103B2 76 years, female 1661.7
Nucleus accumbens
Scaled Tags Per Million: 2797.6
FF:10037-101F1 23-56 years, mixed 2797.6
Putamen
Scaled Tags Per Million: 2269.7
FF:10176-103C5 60 years, female 2269.7
Globus pallidus
Scaled Tags Per Million: 2361.8
FF:10175-103C4 60 years, female 3383.1
FF:10161-103A8 76 years, female 1340.6

BASAL GANGLIA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1706.2
Pig sample Sample description nTPM
Caudate
nTPM: 1147.8
Samples: 4

Max nTPM: 1377.1
Min nTPM: 950.5
Sample A Female 1062.2
Sample B Female 1377.1
Sample C Male 1201.3
Sample D Male 950.5
Putamen
nTPM: 1397.0
Samples: 4

Max nTPM: 1922.3
Min nTPM: 1178.4
Sample A Female 1922.3
Sample B Female 1181.7
Sample C Male 1305.5
Sample D Male 1178.4
Septum
nTPM: 1706.2
Samples: 4

Max nTPM: 2061.2
Min nTPM: 1388.1
Sample A Female 2061.2
Sample B Female 1464.9
Sample C Male 1910.6
Sample D Male 1388.1
Ventral pallidum
nTPM: 1330.9
Samples: 4

Max nTPM: 1515.9
Min nTPM: 1244.2
Sample A Female 1251.2
Sample B Female 1515.9
Sample C Male 1312.4
Sample D Male 1244.2

BASAL GANGLIA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3176.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2708.5
Samples: 4

Max nTPM: 3399.6
Min nTPM: 2173.8
Sample A Male 2516.9
Sample B Male 3399.6
Sample C Female 2173.8
Sample D Female 2743.8
Septum
nTPM: 3176.4
Samples: 4

Max nTPM: 3907.7
Min nTPM: 2411.7
Sample A Male 2411.7
Sample B Male 3907.7
Sample C Female 3500.2
Sample D Female 2885.8
Ventral forebrain
nTPM: 2494.4
Samples: 4

Max nTPM: 3435.4
Min nTPM: 2077.7
Sample A Male 2286.9
Sample B Male 2177.6
Sample C Female 3435.4
Sample D Female 2077.7

BASAL GANGLIA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

26.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 25.4
75496213 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 27.0
75496215 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 26.3
75457612 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 25.9
75457613 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 25.6
75457610 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 25.3
75496211 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 25.3
75457611 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 24.9
75496720 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 24.8
75496212 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 24.7
75496721 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 24.3
69117385 Antisense, RP_050330_01_A08, Mouse strain C57BL/6J (56 days, male) 23.3
75492852 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 22.3
75492862 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 22.2
75492865 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 22.2
69120555 Antisense, RP_050330_01_A08, Mouse strain C57BL/6J (56 days, male) 22.1
75496731 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 21.2
75496741 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 21.1
75492864 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 20.8
Pallidum
Expression energy: 26.3
75496213 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 28.3
75496215 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 28.2
75457612 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 27.8
75457610 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 26.5
75457613 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 26.5
75496211 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 26.1
75496720 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 25.5
75457611 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 25.3
75496212 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 25.2
75496721 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 25.0
75492852 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 23.0
69120555 Antisense, RP_050330_01_A08, Mouse strain C57BL/6J (56 days, male) 22.9
75492862 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 22.6
75492865 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 22.4
75496731 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 21.9
75496741 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 21.7
69117385 Antisense, RP_050330_01_A08, Mouse strain C57BL/6J (56 days, male) 21.3
75492864 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 21.1

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