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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:3125.4 nTPM
FANTOM5:2235.1 Scaled Tags Per Million
Pig:2180.8 nTPM
Allen mouse:20.2 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3125.4
Sample id Sample description nTPM
Area postrema
nTPM: 3125.4
2799 Male, age 61, both hemispheres 4471.5
2054 Male, age 76, both hemispheres 2581.8
2306 Male, age 80, both hemispheres 2323.0
Dorsal medullary reticular nucleus
nTPM: 1652.1
2088 Male, age 76, both hemispheres 2166.7
2373 Male, age 61, both hemispheres 1647.1
2040 Female, age 85, both hemispheres 1142.6
Dorsal motor vagal complex
nTPM: 2626.2
2797 Male, age 61, both hemispheres 5613.1
2185 Male, age 76, both hemispheres 3209.2
2844 Male, age 55, unknown 2880.8
2813 Female, age 72, unknown 2457.5
2000 Male, age 74, unknown 2191.9
2643 Male, age 74, both hemispheres 2130.3
2133 Female, age 91, both hemispheres 1437.9
2807 Female, age 85, both hemispheres 1088.8
Gigantocellular reticular nuclei, medullary
nTPM: 1233.9
2314 Male, age 61, both hemispheres 1716.7
2022 Male, age 76, right hemisphere 1701.0
1876 Female, age 85, both hemispheres 1149.0
2462 Male, age 74, both hemispheres 1073.4
2310 Male, age 80, both hemispheres 885.7
2387 Female, age 91, both hemispheres 877.7
Gigantocellular reticular nuclei, pars
nTPM: 1189.7
2336 Male, age 61, both hemispheres 1414.8
2084 Female, age 85, both hemispheres 1387.3
2168 Male, age 76, both hemispheres 1239.5
2330 Male, age 80, both hemispheres 975.8
2706 Male, age 80, both hemispheres 931.3
Inferior olive
nTPM: 2027.9
2563 Male, age 74, both hemispheres 2755.0
2085 Female, age 85, both hemispheres 2239.5
2379 Male, age 80, both hemispheres 1914.4
2178 Male, age 61, both hemispheres 1840.3
2628 Female, age 91, both hemispheres 1390.1
Lateral medullary reticular nucleus
nTPM: 1647.4
2044 Male, age 76, both hemispheres 2004.8
2374 Male, age 61, both hemispheres 1844.9
2804 Female, age 91, both hemispheres 1656.6
2852 Male, age 80, both hemispheres 1550.6
2190 Female, age 85, both hemispheres 1508.9
2305 Male, age 74, both hemispheres 1318.3
Medial olivary nucleus
nTPM: 1614.8
1962 Male, age 76, both hemispheres 2232.2
2138 Female, age 91, both hemispheres 1482.1
1943 Male, age 61, both hemispheres 1389.3
2851 Male, age 80, both hemispheres 1355.6
Medial vestibular nucleus
nTPM: 1544.6
2134 Male, age 76, both hemispheres 1996.9
2624 Male, age 61, both hemispheres 1622.9
2743 Female, age 85, both hemispheres 1605.5
2801 Male, age 74, both hemispheres 1440.5
2093 Male, age 80, both hemispheres 1385.4
2803 Female, age 91, both hemispheres 1216.1
Motor hypoglossal nucleus
nTPM: 1600.1
2277 Male, age 76, both hemispheres 2679.7
2461 Male, age 61, both hemispheres 2091.9
2125 Female, age 91, both hemispheres 1347.3
2182 Male, age 80, both hemispheres 1125.0
2132 Female, age 85, both hemispheres 756.9
Nucleus ambiguus
nTPM: 1893.2
2071 Male, age 76, both hemispheres 2653.2
2096 Female, age 85, both hemispheres 1133.1
Nucleus cuneatus
nTPM: 1865.8
2562 Male, age 61, both hemispheres 3192.1
2564 Male, age 74, both hemispheres 2310.7
2100 Male, age 76, both hemispheres 1917.8
2131 Male, age 76, both hemispheres 1827.5
2376 Male, age 61, both hemispheres 1634.1
2380 Male, age 80, both hemispheres 1584.5
2805 Female, age 91, both hemispheres 1578.2
2808 Female, age 85, both hemispheres 1514.4
2381 Male, age 80, both hemispheres 1232.8
Nucleus gracilis
nTPM: 1705.9
2627 Male, age 74, both hemispheres 2257.7
2299 Female, age 85, both hemispheres 1794.6
2382 Male, age 80, both hemispheres 1065.5
Nucleus raphe obscurus
nTPM: 1543.3
2142 Male, age 76, midline 2362.8
2800 Male, age 61, midline 1312.0
2845 Female, age 85, midline 955.2
Nucleus raphe pallidus
nTPM: 1655.4
2145 Male, age 76, midline 2167.8
1924 Male, age 61, midline 1414.8
2183 Male, age 80, midline 1383.6
Nucleus tractus solitarii
nTPM: 1636.5
2656 Male, age 76, both hemispheres 2353.9
2191 Female, age 85, both hemispheres 1571.1
2144 Female, age 91, right hemisphere 1445.6
2307 Male, age 80, both hemispheres 1175.5
Parvicellular reticular nuclei
nTPM: 1213.4
2095 Male, age 76, both hemispheres 1572.2
2119 Male, age 80, both hemispheres 1451.7
2558 Male, age 74, both hemispheres 616.5
Parvicellular reticular nuclei, medullary
nTPM: 1345.0
2091 Female, age 85, both hemispheres 1365.5
2189 Female, age 91, both hemispheres 1352.1
2181 Male, age 80, left hemisphere 1317.4
Peritrigeminal nucleus
nTPM: 2060.7
2136 Male, age 76, both hemispheres 2378.7
2067 Female, age 85, both hemispheres 2017.1
2179 Male, age 61, both hemispheres 1786.3
Prepositus hypoglossal nucleus
nTPM: 1584.3
2086 Male, age 80, both hemispheres 1991.5
2855 Female, age 85, right hemisphere 1177.1
Spinal trigeminal nucleus, caudal
nTPM: 1620.0
2447 Male, age 76, both hemispheres 1935.6
2312 Male, age 61, both hemispheres 1898.6
2642 Male, age 74, both hemispheres 1711.4
2308 Male, age 80, both hemispheres 1602.9
2390 Female, age 91, both hemispheres 951.5
Spinal trigeminal nucleus, interpolar
nTPM: 1319.4
2625 Male, age 61, both hemispheres 1641.7
2066 Male, age 76, right hemisphere 1507.0
2033 Male, age 80, both hemispheres 1246.2
2386 Female, age 85, both hemispheres 1221.1
2389 Female, age 91, both hemispheres 980.8
Spinal vestibular nucleus
nTPM: 1475.8
2748 Male, age 76, both hemispheres 1917.1
2796 Male, age 61, both hemispheres 1670.9
2780 Male, age 80, both hemispheres 1429.1
2186 Female, age 91, both hemispheres 1391.9
2806 Female, age 85, both hemispheres 1361.8
2384 Male, age 74, both hemispheres 1083.9
Superior vestibular nucleus
nTPM: 2448.8
2061 Male, age 76, both hemispheres 2871.8
2383 Male, age 74, both hemispheres 2587.2
2015 Male, age 80, both hemispheres 1887.5
Ventral medullary reticular nucleus
nTPM: 1795.8
2060 Male, age 76, both hemispheres 1856.7
2372 Male, age 61, both hemispheres 1734.8
Ventrolateral medulla, A1-C1 cell groups
nTPM: 1620.9
1986 Male, age 76, both hemispheres 2200.4
2302 Female, age 91, both hemispheres 1903.1
2180 Male, age 61, both hemispheres 1471.5
2741 Female, age 85, both hemispheres 1378.7
2118 Male, age 80, both hemispheres 1151.0

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2235.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 2235.1
FF:10174-103C3 60 years, female 2653.9
FF:10038-101F2 18-64 years, mixed 2195.0
FF:10155-103A2 76 years, female 1856.5

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2180.8
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 2180.8
Samples: 4

Max nTPM: 2732.5
Min nTPM: 1503.9
Sample A Female 1503.9
Sample B Female 1836.4
Sample C Male 2732.5
Sample D Male 2650.4

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.2
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 20.2
75457612 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 22.3
69120555 Antisense, RP_050330_01_A08, Mouse strain C57BL/6J (56 days, male) 21.6
75457613 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 20.6
75496215 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 20.3
75496213 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 20.2
69117385 Antisense, RP_050330_01_A08, Mouse strain C57BL/6J (56 days, male) 19.4
75457610 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 18.8
75457611 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 17.7
75496211 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 17.4
75496731 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 17.4
75496721 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 17.3
75496741 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 17.2
75496720 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 17.0
75492864 Antisense, RP_060523_03_G08, Mouse strain C57BL/6J (56 days, male) 16.9
75492865 Antisense, RP_060523_03_H08, Mouse strain C57BL/6J (56 days, male) 16.9
75496212 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 16.9
75492852 Antisense, RP_060523_03_E08, Mouse strain C57BL/6J (56 days, male) 14.7
75492862 Antisense, RP_060523_03_F08, Mouse strain C57BL/6J (56 days, male) 14.4

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