We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CST3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • CST3
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1136.6 nTPM
HPA Brain:2601.1 nTPM
GTEx:1136.6 nTPM
FANTOM5:2086.1 Scaled Tags Per Million
Pig:2728.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2601.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 2517.6
1981 Female, age 72, midline 2934.7
2565 Male, age 75, midline 2659.1
2048 Male, age 55, midline 2562.4
2194 Female, age 79, both hemispheres 2413.3
2816 Male, age 47, midline 2018.4
Cervical spinal cord, dorsal horn
nTPM: 2601.1
2721 Male, age 90, both hemispheres 3737.1
2297 Male, age 75, both hemispheres 2749.8
2069 Male, age 47, both hemispheres 2548.4
1877 Male, age 55, unknown 2474.4
2173 Female, age 72, unknown 2187.1
2296 Male, age 66, both hemispheres 1909.7
Cervical spinal cord, ventral horn
nTPM: 2064.8
2098 Female, age 72, unknown 2584.2
2809 Male, age 90, both hemispheres 2412.3
2295 Male, age 66, both hemispheres 2256.9
2480 Male, age 75, both hemispheres 1940.3
2068 Male, age 55, unknown 1728.5
2820 Female, age 79, both hemispheres 1466.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1136.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1136.6
Samples: 159

Max nTPM: 4755.8
Min nTPM: 297.9
Std nTPM: 611.7
Median nTPM: 986.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 4755.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 3196.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 3172.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 2792.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 2509.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2330.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 2175.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 2169.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 2104.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2099.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 2084.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 2019.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1987.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1951.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1940.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1935.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1904.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1902.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1842.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1840.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1837.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1787.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1753.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1740.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1719.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1712.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1670.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1657.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1564.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1557.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1537.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1535.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1527.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1509.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1508.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1468.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1456.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1430.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1418.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1373.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1363.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1355.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1334.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1288.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1288.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1282.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1257.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1246.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1233.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1220.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1209.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1187.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1181.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1178.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1173.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1169.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1160.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1154.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1153.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1150.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1150.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1147.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1142.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1128.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1119.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1112.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1110.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1085.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1075.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1074.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1065.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1065.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1056.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1034.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1026.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1015.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1013.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1004.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 992.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 986.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 986.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 975.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 973.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 964.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 951.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 930.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 929.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 919.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 915.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 913.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 909.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 899.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 894.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 891.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 885.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 875.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 868.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 865.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 862.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 834.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 834.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 832.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 831.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 821.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 815.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 814.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 810.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 810.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 807.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 805.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 804.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 799.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 799.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 793.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 777.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 764.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 755.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 749.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 748.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 747.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 736.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 733.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 721.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 715.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 702.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 700.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 684.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 679.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 678.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 671.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 668.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 639.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 635.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 629.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 623.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 620.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 603.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 599.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 598.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 583.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 581.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 578.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 545.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 542.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 536.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 525.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 515.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 478.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 472.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 458.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 443.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 435.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 429.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 421.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 416.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 403.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 400.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 357.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 297.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2086.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 2086.1
FF:10181-103D1 60 years, female 2251.0
FF:10159-103A6 76 years, female 1921.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2728.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 2728.2
Samples: 4

Max nTPM: 3649.5
Min nTPM: 1616.5
Sample A Female 1616.5
Sample B Female 3287.8
Sample C Male 3649.5
Sample D Male 2359.0
Ventral spinal cord
nTPM: 2575.7
Samples: 4

Max nTPM: 2979.1
Min nTPM: 1930.0
Sample A Female 1930.0
Sample B Female 2979.1
Sample C Male 2612.8
Sample D Male 2780.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org