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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:3553.4 nTPM
FANTOM5:1661.7 Scaled Tags Per Million
Pig:1147.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA013143Antibody CAB000118
Glial cells MediumMedium
Neuronal cells Not detectedMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3553.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3553.4
Samples: 246

Max nTPM: 12902.0
Min nTPM: 540.4
Std nTPM: 1981.4
Median nTPM: 2996.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 12902.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 11113.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 10779.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 10155.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 9260.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 9189.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 8722.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 8536.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 8066.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 7469.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 7325.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 6941.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 6934.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 6871.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 6689.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 6618.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 6521.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 6507.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 6499.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 6452.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 6446.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 6399.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 6343.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 6175.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 6166.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 6144.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 6105.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 5996.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 5951.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 5913.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 5828.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 5783.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 5783.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 5687.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 5685.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 5613.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 5582.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 5560.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 5522.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 5467.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 5445.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 5391.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 5387.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 5291.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 5173.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 5081.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 5055.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 5038.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 5023.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 4891.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 4870.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 4858.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 4823.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 4797.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 4791.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 4768.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 4718.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 4660.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 4630.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 4614.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 4603.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 4602.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 4558.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 4554.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 4482.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 4461.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 4459.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 4458.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 4427.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 4358.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 4352.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 4317.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 4282.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 4236.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 4074.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 4053.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 3999.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 3998.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 3930.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 3900.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 3843.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 3832.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 3827.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 3798.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 3778.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 3767.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 3767.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 3722.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 3691.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 3677.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 3671.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 3667.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 3664.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 3664.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 3662.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 3648.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 3627.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 3623.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 3614.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 3578.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 3576.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 3526.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 3504.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 3490.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 3355.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 3345.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 3341.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 3322.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 3302.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 3285.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 3280.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 3257.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 3257.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 3216.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 3211.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 3207.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 3196.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 3085.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 3082.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 3070.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 3060.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 3050.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 3016.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 2977.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 2942.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 2902.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 2898.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 2892.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 2869.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 2858.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 2833.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 2831.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 2830.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 2810.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 2808.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 2802.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 2767.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 2766.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 2760.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 2756.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 2738.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 2733.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 2731.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 2713.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 2692.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 2685.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 2676.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 2661.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 2660.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 2659.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 2656.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 2654.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 2641.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 2637.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 2588.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 2585.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 2583.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 2472.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 2461.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 2459.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 2458.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 2457.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 2453.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 2444.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 2441.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 2432.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 2429.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 2424.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 2412.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 2409.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 2405.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 2402.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 2371.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 2367.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 2365.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 2364.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 2338.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 2314.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 2300.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 2240.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 2235.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 2211.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 2198.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 2185.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 2143.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 2134.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 2125.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 2092.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 2091.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 2083.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 2065.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 2048.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 2044.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 2040.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 2029.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 2024.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 2014.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 2009.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1972.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1937.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1919.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1918.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1894.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1866.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 1834.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1820.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1812.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1809.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1787.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1783.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1773.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1761.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1757.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1746.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1734.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1713.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1701.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1690.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1689.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1676.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1640.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1520.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1498.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1477.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1469.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1430.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1429.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1417.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1355.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1312.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1307.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1287.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1275.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1260.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 1205.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1179.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1157.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1154.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1153.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 1097.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1082.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 949.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 890.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 791.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 726.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 540.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1661.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1661.7
FF:10164-103B2 76 years, female 1661.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1147.8
Pig sample Sample description nTPM
Caudate
nTPM: 1147.8
Samples: 4

Max nTPM: 1377.1
Min nTPM: 950.5
Sample A Female 1062.2
Sample B Female 1377.1
Sample C Male 1201.3
Sample D Male 950.5

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