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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:777.3 nTPM
HPA:500.0 nTPM
GTEx:777.3 nTPM
FANTOM5:1383.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA013143Antibody CAB000118
Glandular cells HighMedium




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

500.0
overview
Male, age 65
Small intestine sample 232
nTPM: 376.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 676
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 524
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 423.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

777.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 777.3
Samples: 187

Max nTPM: 2797.5
Min nTPM: 153.5
Std nTPM: 432.6
Median nTPM: 683.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 2797.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 2411.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2288.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 2083.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1936.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1925.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1878.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1857.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1837.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1737.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1639.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1550.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1543.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1525.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1461.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1457.3
GTEX-1192X-2526-SM-59868 50-59 years, male 1338.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1302.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1292.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1283.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1238.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1194.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1182.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1148.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1127.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1120.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1115.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1098.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1078.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1072.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1065.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1036.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1031.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1028.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1026.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1023.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1016.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1012.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1010.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 984.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 980.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 972.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 958.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 958.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 944.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 939.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 937.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 934.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 932.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 927.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 917.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 914.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 913.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 907.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 907.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 901.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 901.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 884.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 884.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 882.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 873.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 856.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 849.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 847.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 836.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 826.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 810.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 808.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 808.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 804.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 800.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 793.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 790.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 782.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 781.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 780.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 779.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 765.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 764.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 746.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 744.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 738.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 733.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 721.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 719.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 713.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 706.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 703.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 699.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 698.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 694.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 690.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 684.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 683.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 668.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 660.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 655.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 654.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 652.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 650.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 649.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 649.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 647.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 641.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 632.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 631.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 625.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 609.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 608.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 607.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 600.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 594.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 594.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 592.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 590.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 590.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 588.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 586.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 586.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 581.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 574.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 571.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 570.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 559.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 556.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 551.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 548.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 548.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 545.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 538.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 535.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 533.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 532.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 525.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 518.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 514.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 512.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 508.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 508.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 508.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 505.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 502.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 498.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 496.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 492.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 486.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 484.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 465.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 450.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 441.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 441.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 425.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 422.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 403.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 402.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 395.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 394.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 394.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 388.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 387.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 383.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 379.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 369.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 368.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 367.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 358.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 356.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 355.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 348.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 332.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 330.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 330.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 329.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 316.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 313.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 305.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 299.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 297.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 292.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 286.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 284.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 257.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 249.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 217.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 204.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 179.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 153.5
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1383.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1383.4
FF:10024-101D6 15,40,85 years, mixed 1383.4

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