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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:598.5 nTPM
GTEx:598.5 nTPM
FANTOM5:1448.1 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA013143Antibody CAB000118
Squamous epithelial cells LowLow



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

598.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 598.5
Samples: 156

Max nTPM: 1426.4
Min nTPM: 181.9
Std nTPM: 244.6
Median nTPM: 549.5
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1426.4
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1414.1
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 1354.9
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 1326.8
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1186.1
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 1157.4
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1115.6
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1079.7
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1043.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1039.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1033.5
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 969.8
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 955.6
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 951.0
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 945.9
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 939.7
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 936.8
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 932.6
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 892.9
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 858.6
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 858.1
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 852.4
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 843.3
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 837.5
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 836.1
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 836.0
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 832.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 828.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 822.9
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 813.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 809.7
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 809.4
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 806.9
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 791.2
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 788.0
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 750.5
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 746.7
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 734.1
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 708.2
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 698.3
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 696.7
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 696.4
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 690.3
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 688.8
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 685.4
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 684.6
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 683.4
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 670.0
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 668.6
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 657.6
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 654.7
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 654.3
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 653.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 650.2
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 633.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 625.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 621.4
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 619.5
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 616.8
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 603.0
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 601.1
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 598.8
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 593.4
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 591.9
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 588.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 588.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 582.5
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 579.2
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 577.6
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 575.1
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 573.6
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 569.2
GTEX-QCQG-1226-SM-48U23 50-59 years, female 567.9
GTEX-16NPV-2526-SM-6M483 50-59 years, female 555.8
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 555.5
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 551.7
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 550.9
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 550.5
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 548.5
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 548.2
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 547.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 543.4
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 537.7
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 533.3
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 532.7
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 530.8
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 527.2
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 524.5
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 524.5
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 516.8
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 516.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 504.8
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 496.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 494.8
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 491.6
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 490.8
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 485.6
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 481.6
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 462.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 460.7
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 460.1
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 458.7
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 456.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 451.2
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 447.4
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 447.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 440.7
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 440.2
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 436.4
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 434.9
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 431.6
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 426.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 424.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 423.1
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 420.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 419.0
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 417.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 412.7
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 410.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 404.6
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 400.5
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 398.6
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 398.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 396.2
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 395.5
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 393.5
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 389.8
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 389.2
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 383.4
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 376.0
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 375.9
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 373.9
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 373.6
GTEX-14PKU-1326-SM-6871B 40-49 years, female 373.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 368.2
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 364.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 363.2
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 360.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 356.1
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 354.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 351.2
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 350.2
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 347.9
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 332.8
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 331.4
GTEX-11I78-2026-SM-5987C 50-59 years, female 323.4
GTEX-S341-1226-SM-4AD5S 40-49 years, female 317.7
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 305.4
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 304.4
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 294.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 289.1
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 285.8
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 274.5
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 235.3
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 230.7
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 181.9
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1448.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1448.1
FF:10204-103F6 68 years, female 1448.1

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