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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:2463.7 nTPM
GTEx:2661.9 nTPM
FANTOM5:2955.5 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA013143Antibody CAB000118
Glial cells MediumNot detected
Neuronal cells MediumMedium




HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2463.7
Sample id Sample description nTPM
Hippocampus
nTPM: 2463.7
2148 Female, age 91, left hemisphere 3249.1
2529 Female, age 94, left hemisphere 2603.7
2621 Female, age 67, right hemisphere 2533.6
1911 Female, age 85, right hemisphere 2446.4
1898 Male, age 80, left hemisphere 2296.3
1855 Male, age 76, left hemisphere 1653.2

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2661.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 2661.9
Samples: 197

Max nTPM: 10570.7
Min nTPM: 464.3
Std nTPM: 1465.7
Median nTPM: 2293.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 10570.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 7981.4
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 6717.1
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 6711.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 6696.6
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 6477.6
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 6244.4
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 6178.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 5814.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 5568.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 5550.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 5453.2
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 5104.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 5085.0
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 5011.2
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 4945.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 4933.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 4917.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 4611.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 4466.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 4329.3
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 4239.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 4043.8
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 4019.4
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 4009.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 4008.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 3922.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 3878.0
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 3874.2
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 3857.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 3845.1
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 3808.2
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 3781.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 3780.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 3779.5
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 3712.4
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 3684.6
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 3666.5
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 3640.9
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 3638.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 3566.2
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 3511.3
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 3507.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 3498.3
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 3490.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 3487.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 3388.3
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 3359.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 3318.8
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 3303.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 3252.5
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 3221.9
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 3220.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 3213.2
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 3173.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 3167.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 3132.5
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 3129.9
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 3062.3
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 3058.2
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 3058.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 3050.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 3042.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 3029.6
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 2977.5
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 2935.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 2935.2
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 2925.2
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 2903.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 2903.8
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 2828.8
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 2797.7
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 2776.7
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 2765.9
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 2763.0
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 2730.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 2714.3
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 2687.0
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 2684.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 2674.0
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 2643.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 2622.2
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 2619.3
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 2603.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 2595.4
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 2540.0
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 2511.7
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 2483.4
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 2444.3
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 2431.0
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 2410.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 2389.9
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 2361.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 2340.0
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 2335.7
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 2330.1
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 2330.0
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 2311.5
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 2293.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 2287.8
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 2287.6
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 2276.4
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 2264.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 2264.4
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 2263.8
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 2244.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 2238.4
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 2228.2
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 2224.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 2217.5
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 2199.7
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 2186.9
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 2156.7
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 2150.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 2128.8
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 2124.2
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 2122.8
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 2112.2
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 2088.9
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 2085.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 2030.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 2026.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 2013.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 2004.8
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 1979.9
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 1978.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 1976.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 1921.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 1897.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 1891.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 1867.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 1859.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 1853.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 1845.1
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 1812.8
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 1800.9
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 1800.8
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 1794.3
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 1733.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 1722.3
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 1703.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 1700.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 1688.6
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 1681.8
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 1671.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 1665.9
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 1645.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 1639.4
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 1602.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 1596.3
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 1568.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 1537.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 1536.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 1523.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 1513.8
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 1513.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 1507.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 1502.5
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 1484.0
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 1477.8
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 1465.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 1446.9
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 1426.5
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 1422.2
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 1387.9
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 1382.0
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 1376.8
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 1359.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 1345.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 1338.1
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 1327.7
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 1326.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 1306.4
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 1306.3
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 1298.9
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 1287.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 1225.2
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 1223.7
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 1214.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 1162.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 1154.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 1154.0
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 1153.4
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 1139.9
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 1129.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 1124.8
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 1106.4
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 1010.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 992.0
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 981.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 934.4
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 897.4
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 631.6
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 603.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 592.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 562.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 464.3
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2955.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 2955.5
FF:10169-103B7 60 years, female 3059.6
FF:10153-102I9 76 years, female 2851.4

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