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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:510.5 nTPM
HPA Brain:339.4 nTPM
GTEx:510.5 nTPM
FANTOM5:341.1 Scaled Tags Per Million
Pig:303.7 nTPM
Mouse:465.2 nTPM
Allen mouse:17.8 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

339.4
Sample id Sample description nTPM
Amygdala
nTPM: 291.7
2814 Male, age 76, right hemisphere 391.3
2695 Female, age 67, right hemisphere 294.1
2517 Female, age 94, left hemisphere 276.9
1987 Female, age 91, left hemisphere 263.9
2514 Male, age 75, right hemisphere 232.0
Basal amygdala
nTPM: 339.4
2827 Female, age 67, right hemisphere 380.7
2609 Male, age 75, right hemisphere 373.3
2685 Female, age 94, left hemisphere 354.0
1955 Male, age 76, both hemispheres 341.3
2243 Female, age 91, right hemisphere 299.8
2110 Male, age 80, left hemisphere 287.4
Central amygdala
nTPM: 334.4
2826 Female, age 94, left hemisphere 511.3
1905 Male, age 76, both hemispheres 388.0
2239 Male, age 80, left hemisphere 279.0
2515 Male, age 75, right hemisphere 254.1
2701 Female, age 91, right hemisphere 239.5
Corticomedial amygdala
nTPM: 278.3
2829 Male, age 80, left hemisphere 359.3
2535 Female, age 67, right hemisphere 307.6
2428 Male, age 75, right hemisphere 286.3
2429 Female, age 94, left hemisphere 260.5
2242 Female, age 91, right hemisphere 232.9
2240 Male, age 76, both hemispheres 223.4
Lateral amygdala
nTPM: 331.4
2534 Female, age 94, left hemisphere 454.9
1883 Male, age 76, both hemispheres 391.6
2256 Male, age 80, left hemisphere 324.9
2830 Female, age 67, right hemisphere 297.4
2516 Male, age 75, right hemisphere 282.9
2255 Female, age 91, right hemisphere 236.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

510.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 510.5
Samples: 152

Max nTPM: 1572.4
Min nTPM: 135.1
Std nTPM: 196.5
Median nTPM: 481.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1572.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1140.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1136.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 956.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 914.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 855.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 848.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 823.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 793.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 792.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 785.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 783.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 782.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 765.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 750.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 749.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 743.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 739.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 719.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 714.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 705.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 704.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 700.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 688.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 688.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 680.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 679.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 672.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 670.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 665.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 661.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 661.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 657.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 653.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 628.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 619.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 619.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 611.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 603.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 600.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 599.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 594.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 577.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 570.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 568.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 567.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 562.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 558.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 557.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 552.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 549.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 548.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 548.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 540.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 539.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 530.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 529.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 528.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 524.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 520.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 518.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 517.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 516.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 515.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 508.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 502.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 500.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 500.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 497.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 494.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 487.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 486.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 485.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 485.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 484.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 482.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 480.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 478.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 477.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 474.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 474.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 469.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 468.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 465.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 463.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 460.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 456.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 454.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 453.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 452.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 451.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 444.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 439.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 438.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 437.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 435.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 431.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 426.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 425.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 416.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 416.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 415.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 415.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 407.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 398.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 395.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 393.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 392.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 391.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 390.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 387.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 382.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 377.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 377.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 376.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 375.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 375.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 374.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 374.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 365.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 365.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 364.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 357.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 356.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 354.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 329.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 328.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 323.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 323.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 323.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 321.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 320.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 316.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 303.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 300.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 295.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 295.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 293.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 290.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 286.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 282.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 279.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 275.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 264.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 262.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 259.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 239.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 238.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 237.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 236.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 185.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 135.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

341.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 341.1
FF:10151-102I7 76 years, female 341.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

303.7
Pig sample Sample description nTPM
Amygdala
nTPM: 303.7
Samples: 4

Max nTPM: 439.7
Min nTPM: 244.1
Sample A Female 439.7
Sample B Female 244.1
Sample C Male 282.1
Sample D Male 248.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

465.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 465.3
Samples: 4

Max nTPM: 536.5
Min nTPM: 428.7
Sample A Male 461.8
Sample B Male 434.0
Sample C Female 536.5
Sample D Female 428.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

17.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 17.8
69524404 Antisense, RP_050419_04_C07, Mouse strain C57BL/6J (56 days, male) 17.8

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