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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:226.5 nTPM
HPA:92.7 nTPM
GTEx:226.5 nTPM
FANTOM5:273.0 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.7
overview
Male, age 65
Small intestine sample 232
nTPM: 83.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 98.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 90.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 97.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

226.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 226.5
Samples: 187

Max nTPM: 508.5
Min nTPM: 113.9
Std nTPM: 72.4
Median nTPM: 211.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 508.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 481.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 425.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 424.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 420.2
GTEX-1192X-2526-SM-59868 50-59 years, male 409.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 397.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 391.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 391.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 391.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 381.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 375.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 371.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 370.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 364.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 363.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 350.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 336.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 334.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 334.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 332.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 329.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 326.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 313.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 311.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 304.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 304.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 294.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 284.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 276.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 272.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 271.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 268.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 267.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 264.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 263.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 263.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 263.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 261.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 260.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 256.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 255.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 255.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 253.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 252.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 252.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 250.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 250.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 249.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 249.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 248.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 247.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 244.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 242.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 242.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 241.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 240.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 237.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 236.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 236.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 235.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 235.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 234.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 234.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 230.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 229.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 228.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 227.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 226.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 226.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 226.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 225.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 224.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 224.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 223.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 223.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 222.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 222.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 221.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 220.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 220.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 219.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 218.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 217.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 217.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 215.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 215.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 215.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 213.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 212.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 212.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 212.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 211.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 211.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 210.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 209.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 208.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 208.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 207.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 207.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 207.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 206.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 206.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 205.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 204.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 203.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 203.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 202.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 202.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 202.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 202.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 201.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 200.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 200.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 199.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 198.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 198.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 195.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 195.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 195.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 194.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 194.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 194.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 193.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 192.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 191.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 190.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 187.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 187.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 186.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 186.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 184.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 184.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 184.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 182.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 182.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 181.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 181.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 181.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 180.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 180.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 180.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 179.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 178.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 177.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 176.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 175.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 174.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 173.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 172.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 170.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 168.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 167.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 166.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 165.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 164.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 164.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 164.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 162.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 162.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 161.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 160.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 160.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 160.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 158.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 157.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 157.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 155.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 153.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 152.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 151.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 150.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 150.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 149.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 145.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 136.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 134.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 133.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 131.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 131.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 130.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 128.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 125.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 123.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 121.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 120.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 113.9
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

273.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 273.0
FF:10024-101D6 15,40,85 years, mixed 273.0

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