MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:340.9 nTPM
HPA Brain:296.5 nTPM
GTEx:340.9 nTPM
FANTOM5:174.2 Scaled Tags Per Million
Pig:402.7 nTPM
Mouse:295.5 nTPM
Allen mouse:16.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 296.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 262.1
2586 Male, age 75, left hemisphere 376.0
2019 Male, age 18, unknown 369.5
2828 Female, age 72, unknown 305.2
2666 Male, age 74, left hemisphere 294.4
1827 Male, age 72, unknown 261.7
2219 Male, age 76, both hemispheres 250.7
1870 Female, age 42, unknown 218.5
2411 Female, age 72, unknown 184.9
1830 Male, age 51, unknown 183.6
1833 Male, age 53, unknown 176.6
Dorsal raphe nucleus
nTPM: 229.5
1828 Male, age 53, unknown 244.0
2047 Male, age 72, unknown 241.3
2750 Male, age 76, both hemispheres 237.6
2298 Female, age 72, unknown 219.1
2016 Female, age 72, unknown 205.7
Inferior colliculus
nTPM: 252.6
2097 Female, age 72, unknown 321.5
1890 Male, age 53, unknown 286.2
1848 Female, age 42, unknown 203.0
2849 Male, age 72, unknown 199.6
Median raphe nucleus
nTPM: 243.3
2220 Male, age 76, midline 243.3
Periaquaductal grey, anterior
nTPM: 240.7
1795 Male, age 51, unknown 260.0
2502 Female, age 75, unknown 252.1
1947 Male, age 18, unknown 209.9
Periaquaductal grey, dorsal
nTPM: 180.0
2850 Male, age 76, both hemispheres 201.2
1831 Male, age 72, unknown 183.5
1840 Male, age 53, unknown 172.3
2464 Female, age 72, unknown 163.1
Periaquaductal grey, lateral
nTPM: 176.1
2053 Male, age 18, unknown 185.2
2140 Male, age 76, both hemispheres 182.9
2272 Male, age 74, both hemispheres 160.2
Pretectal area
nTPM: 296.5
2007 Male, age 72, unknown 478.7
1817 Female, age 42, unknown 428.6
1816 Male, age 51, unknown 423.4
1944 Female, age 72, unknown 405.7
1815 Male, age 53, unknown 352.1
2667 Female, age 75, unknown 254.3
2316 Male, age 76, right hemisphere 208.6
2224 Female, age 72, unknown 196.6
2407 Male, age 75, both hemispheres 182.9
2825 Male, age 18, unknown 173.4
2273 Male, age 74, both hemispheres 157.5
Red nucleus
nTPM: 240.7
2785 Male, age 18, unknown 359.9
2588 Male, age 74, left hemisphere 286.8
2584 Male, age 75, left hemisphere 267.9
1821 Female, age 72, unknown 248.5
2503 Female, age 72, unknown 241.7
2725 Female, age 75, unknown 235.8
2769 Male, age 72, unknown 225.3
2227 Male, age 72, unknown 216.0
1954 Female, age 42, unknown 212.6
1904 Male, age 53, unknown 203.2
1865 Male, age 51, unknown 196.9
2823 Male, age 76, right hemisphere 193.6
Substantia nigra
nTPM: 292.6
1889 Female, age 72, unknown 387.0
2665 Male, age 74, both hemispheres 374.2
1916 Female, age 42, unknown 365.1
1941 Male, age 53, unknown 357.3
1851 Male, age 51, unknown 289.5
2241 Male, age 72, unknown 253.4
2583 Male, age 75, right hemisphere 243.9
2590 Female, age 75, unknown 225.2
2409 Female, age 72, unknown 224.7
2699 Male, age 18, unknown 205.4
Superior colliculus
nTPM: 245.4
2668 Female, age 75, unknown 316.3
2087 Female, age 72, unknown 271.0
2664 Male, age 75, both hemispheres 270.0
2261 Male, age 18, unknown 259.9
1895 Male, age 76, right hemisphere 255.7
1796 Male, age 53, unknown 240.8
1913 Female, age 42, unknown 226.4
2587 Male, age 74, left hemisphere 208.4
1839 Male, age 51, unknown 205.3
1995 Male, age 72, unknown 200.2
Ventral tegmental area
nTPM: 240.8
1915 Female, age 42, unknown 283.5
1942 Male, age 51, unknown 274.6
2218 Male, age 76, both hemispheres 246.1
2410 Female, age 72, unknown 232.6
2021 Male, age 53, unknown 210.7
2223 Female, age 72, unknown 197.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 340.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 340.9
Samples: 139

Max nTPM: 916.9
Min nTPM: 151.8
Std nTPM: 107.4
Median nTPM: 323.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 916.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 625.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 601.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 562.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 556.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 533.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 530.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 502.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 501.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 495.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 492.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 174.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 174.2
FF:10158-103A5 76 years, female 174.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 402.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 261.7
Samples: 4

Max nTPM: 349.3
Min nTPM: 178.0
Sample A Female 349.3
Sample B Female 220.2
Sample C Male 299.1
Sample D Male 178.0
Midbrain
nTPM: 345.2
Samples: 4

Max nTPM: 518.5
Min nTPM: 205.1
Sample A Female 205.1
Sample B Female 254.4
Sample C Male 518.5
Sample D Male 402.8
Periaqueductal gray
nTPM: 213.1
Samples: 3

Max nTPM: 241.0
Min nTPM: 189.9
Sample B Female 208.4
Sample C Male 241.0
Sample D Male 189.9
Superior colliculi
nTPM: 402.7
Samples: 4

Max nTPM: 468.1
Min nTPM: 296.0
Sample A Female 468.1
Sample B Female 296.0
Sample C Male 460.1
Sample D Male 386.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 295.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 295.5
Samples: 4

Max nTPM: 345.6
Min nTPM: 260.1
Sample A Male 345.6
Sample B Male 285.5
Sample C Female 260.1
Sample D Female 290.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 16.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.0
69524404 Antisense, RP_050419_04_C07, Mouse strain C57BL/6J (56 days, male) 16.0

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