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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:271.6 nTPM
HPA Brain:249.6 nTPM
GTEx:271.6 nTPM
FANTOM5:227.6 Scaled Tags Per Million
Pig:201.6 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

249.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 236.0
2565 Male, age 75, midline 317.5
2194 Female, age 79, both hemispheres 242.7
2048 Male, age 55, midline 213.3
1981 Female, age 72, midline 211.1
2816 Male, age 47, midline 195.5
Cervical spinal cord, dorsal horn
nTPM: 238.9
2297 Male, age 75, both hemispheres 320.1
1877 Male, age 55, unknown 243.0
2173 Female, age 72, unknown 232.1
2069 Male, age 47, both hemispheres 228.3
2721 Male, age 90, both hemispheres 220.8
2296 Male, age 66, both hemispheres 189.0
Cervical spinal cord, ventral horn
nTPM: 249.6
2480 Male, age 75, both hemispheres 346.3
2809 Male, age 90, both hemispheres 257.9
2820 Female, age 79, both hemispheres 256.3
2068 Male, age 55, unknown 251.6
2295 Male, age 66, both hemispheres 251.4
2098 Female, age 72, unknown 134.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

271.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 271.6
Samples: 159

Max nTPM: 495.4
Min nTPM: 153.3
Std nTPM: 55.6
Median nTPM: 268.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 495.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 397.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 394.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 387.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 384.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 382.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 379.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 370.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 364.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 363.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 357.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 351.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 347.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 341.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 341.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 340.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 337.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 337.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 336.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 334.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 332.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 330.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 330.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 329.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 327.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 327.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 325.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 324.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 323.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 323.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 322.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 320.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 318.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 317.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 314.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 314.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 312.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 308.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 307.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 306.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 306.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 302.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 301.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 301.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 299.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 299.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 299.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 297.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 296.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 295.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 292.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 291.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 291.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 290.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 289.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 289.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 286.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 286.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 285.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 285.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 283.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 283.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 283.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 281.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 280.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 280.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 279.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 277.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 275.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 275.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 275.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 274.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 273.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 272.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 271.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 271.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 270.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 270.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 269.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 268.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 267.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 267.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 266.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 265.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 265.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 263.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 263.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 262.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 262.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 262.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 261.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 257.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 257.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 256.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 256.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 256.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 255.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 254.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 253.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 253.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 252.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 252.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 251.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 251.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 250.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 249.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 247.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 247.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 247.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 245.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 244.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 242.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 241.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 241.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 240.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 237.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 237.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 237.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 235.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 235.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 234.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 233.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 230.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 229.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 224.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 224.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 224.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 224.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 224.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 221.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 220.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 220.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 220.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 219.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 219.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 218.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 214.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 213.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 213.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 212.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 206.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 201.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 200.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 199.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 196.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 193.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 193.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 193.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 183.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 181.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 180.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 180.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 180.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 179.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 175.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 162.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 160.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 154.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 153.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

227.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 227.6
FF:10181-103D1 60 years, female 284.4
FF:10159-103A6 76 years, female 170.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

201.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 201.6
Samples: 4

Max nTPM: 235.9
Min nTPM: 159.4
Sample A Female 235.9
Sample B Female 159.4
Sample C Male 188.3
Sample D Male 222.7
Ventral spinal cord
nTPM: 200.8
Samples: 4

Max nTPM: 222.0
Min nTPM: 169.9
Sample A Female 216.4
Sample B Female 194.7
Sample C Male 222.0
Sample D Male 169.9

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