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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:343.0 nTPM
GTEx:343.0 nTPM
FANTOM5:534.9 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:73.6 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

343.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 343.0
Samples: 105

Max nTPM: 680.0
Min nTPM: 119.8
Std nTPM: 107.1
Median nTPM:
218_1 71 years, female 680.0
355_1 70 years, female 534.2
354_1 81 years, female 529.4
352_1 62 years, male 520.3
452_1 88 years, female 514.0
356_1 87 years, female 512.4
319_1 81 years, male 504.6
377_1 82 years, female 495.1
322_1 76 years, male 494.6
353_1 82 years, female 490.8
321_1 62 years, female 485.3
349_1 83 years, male 475.8
243_1 75 years, male 472.0
35_1 74 years, female 471.2
394_1 75 years, female 459.7
447_1 81 years, male 458.4
389_1 86 years, female 458.3
379_1 60 years, male 452.3
153_1 70 years, female 447.8
376_1 75 years, female 447.3
4_1 88 years, female 440.2
335_1 73 years, female 439.8
237_1 82 years, male 436.8
295_1 61 years, female 429.9
350_1 84 years, female 428.8
384_1 83 years, male 427.9
172_1 72 years, female 427.1
173_1 67 years, male 426.9
163_1 78 years, male 421.3
351_1 91 years, male 417.1
286_1 68 years, female 416.1
6_1 73 years, female 413.5
396_1 62 years, male 399.6
386_1 76 years, male 397.5
506_1 65 years, male 396.3
406_1 79 years, male 392.4
405_1 91 years, male 390.2
404_1 82 years, female 388.4
189_1 76 years, male 387.5
347_1 72 years, male 384.9
375_1 74 years, female 384.9
503_1 68 years, male 383.6
2_1 77 years, female 380.0
251_1 78 years, male 379.6
120_1 70 years, female 377.6
293_1 68 years, female 365.3
320_1 89 years, female 364.6
99_1 64 years, male 364.5
316_1 62 years, male 362.5
145_1 84 years, male 354.0
229_1 69 years, female 349.4
17_1 71 years, male 343.8
291_1 76 years, male 341.4
318_1 68 years, male 341.2
177_1 74 years, male 335.9
137_1 83 years, male 335.8
292_1 71 years, male 333.5
480_1 63 years, male 329.0
317_1 60 years, male 327.5
246_1 77 years, male 313.1
425_1 59 years, female 310.7
517_1 88 years, male 304.7
18_1 88 years, male 302.5
115_1 83 years, male 300.8
266_1 85 years, male 300.4
518_1 75 years, female 295.9
526_1 61 years, male 294.8
41_1 94 years, female 283.9
348_1 84 years, male 283.2
265_1 87 years, male 277.6
311_1 78 years, male 275.9
126_1 63 years, male 272.5
109_1 81 years, female 271.4
117_1 61 years, male 266.6
42_1 85 years, male 266.4
264_1 73 years, female 263.8
162_1 79 years, female 262.9
9_1 66 years, female 255.0
468_1 89 years, male 252.4
254_1 77 years, female 251.9
499_1 55 years, female 247.2
81_1 67 years, male 242.1
139_1 64 years, female 239.1
142_1 61 years, female 237.3
307_1 66 years, female 235.0
314_1 67 years, male 234.9
315_1 62 years, female 232.6
217_1 76 years, male 229.7
288_1 66 years, female 228.7
415_1 77 years, female 228.2
32_1 67 years, male 224.9
324_1 76 years, male 221.8
495_1 57 years, female 220.3
119_1 70 years, female 220.2
308_1 70 years, female 219.8
414_1 84 years, female 219.4
466_1 57 years, female 198.5
313_1 79 years, female 194.7
89_1 63 years, male 190.9
501_1 88 years, male 175.6
490_1 67 years, female 166.1
43_1 64 years, female 164.2
491_1 89 years, female 154.8
413_1 59 years, female 140.0
149_1 88 years, male 119.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

534.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 534.9
FF:10030-101E3 24-65 years, mixed 534.9

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.0
Pig sample Sample description nTPM
Retina
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.2
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.6
Mouse sample Sample description nTPM
Retina
nTPM: 73.6
Samples: 4

Max nTPM: 157.2
Min nTPM: 36.2
Sample A Male 56.0
Sample B Male 44.9
Sample C Female 157.2
Sample D Female 36.2

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