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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1093.7 nTPM
HPA Brain:415.0 nTPM
GTEx:1093.7 nTPM
FANTOM5:277.0 Scaled Tags Per Million
Pig:0.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

415.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 331.8
2565 Male, age 75, midline 450.5
1981 Female, age 72, midline 386.7
2048 Male, age 55, midline 297.3
2816 Male, age 47, midline 265.4
2194 Female, age 79, both hemispheres 259.0
Cervical spinal cord, dorsal horn
nTPM: 330.4
2173 Female, age 72, unknown 422.0
2069 Male, age 47, both hemispheres 389.4
2296 Male, age 66, both hemispheres 372.7
1877 Male, age 55, unknown 348.3
2721 Male, age 90, both hemispheres 236.2
2297 Male, age 75, both hemispheres 213.7
Cervical spinal cord, ventral horn
nTPM: 415.0
2480 Male, age 75, both hemispheres 578.5
2809 Male, age 90, both hemispheres 529.1
2098 Female, age 72, unknown 466.9
2295 Male, age 66, both hemispheres 356.7
2068 Male, age 55, unknown 337.8
2820 Female, age 79, both hemispheres 220.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1093.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1093.7
Samples: 159

Max nTPM: 2037.4
Min nTPM: 370.3
Std nTPM: 329.0
Median nTPM: 1046.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2037.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1940.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1939.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1933.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1928.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1872.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1871.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1700.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1681.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1676.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1643.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1580.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1560.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1548.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1531.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1525.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1508.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1508.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1498.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1492.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1475.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1462.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1434.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1432.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1420.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1407.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1405.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1404.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1396.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1379.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1378.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1378.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1362.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1361.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1357.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1354.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1350.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1342.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1330.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1319.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1317.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1317.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1270.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1257.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1250.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1245.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1242.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1222.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1222.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1221.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1214.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1213.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1201.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1189.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1159.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1156.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1154.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1153.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1149.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1149.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1146.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1145.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1144.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1139.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1134.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1125.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1121.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1121.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1120.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1118.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1108.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1106.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1100.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1088.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1086.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1078.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1066.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1059.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1051.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1046.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1045.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1040.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1038.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1033.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1029.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1026.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1019.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1012.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1003.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1002.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1001.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 995.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 980.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 979.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 961.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 961.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 955.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 954.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 949.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 945.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 943.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 935.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 935.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 932.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 925.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 919.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 910.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 903.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 903.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 893.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 889.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 883.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 881.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 879.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 876.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 875.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 867.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 867.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 864.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 863.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 852.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 840.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 840.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 834.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 831.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 828.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 815.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 813.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 812.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 809.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 791.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 784.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 780.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 775.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 774.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 761.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 755.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 754.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 750.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 746.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 727.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 726.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 719.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 714.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 706.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 700.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 678.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 660.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 653.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 646.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 644.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 639.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 632.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 624.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 554.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 527.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 506.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 474.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 370.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

277.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 277.0
FF:10181-103D1 60 years, female 294.8
FF:10159-103A6 76 years, female 259.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.1
Sample D Male 0.1
Ventral spinal cord
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.1
Sample C Male 0.2
Sample D Male 0.0

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