MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:478.9 nTPM
HPA Brain:982.4 nTPM
GTEx:478.9 nTPM
FANTOM5:650.0 Scaled Tags Per Million
Pig:909.6 nTPM
Mouse:657.5 nTPM
Allen mouse:26.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 982.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 722.5
2411 Female, age 72, unknown 1025.9
1870 Female, age 42, unknown 873.4
1830 Male, age 51, unknown 869.5
2019 Male, age 18, unknown 848.6
1833 Male, age 53, unknown 825.0
2828 Female, age 72, unknown 628.5
2666 Male, age 74, left hemisphere 562.8
2586 Male, age 75, left hemisphere 556.8
1827 Male, age 72, unknown 539.6
2219 Male, age 76, both hemispheres 495.4
Dorsal raphe nucleus
nTPM: 566.9
2750 Male, age 76, both hemispheres 1031.9
1828 Male, age 53, unknown 506.3
2016 Female, age 72, unknown 479.4
2047 Male, age 72, unknown 420.0
2298 Female, age 72, unknown 397.0
Inferior colliculus
nTPM: 489.3
1848 Female, age 42, unknown 519.3
1890 Male, age 53, unknown 500.3
2849 Male, age 72, unknown 473.2
2097 Female, age 72, unknown 464.5
Median raphe nucleus
nTPM: 525.8
2220 Male, age 76, midline 525.8
Periaquaductal grey, anterior
nTPM: 432.3
1947 Male, age 18, unknown 500.1
2502 Female, age 75, unknown 399.1
1795 Male, age 51, unknown 397.6
Periaquaductal grey, dorsal
nTPM: 359.6
2464 Female, age 72, unknown 513.8
1831 Male, age 72, unknown 393.0
1840 Male, age 53, unknown 290.5
2850 Male, age 76, both hemispheres 241.2
Periaquaductal grey, lateral
nTPM: 432.2
2272 Male, age 74, both hemispheres 568.8
2053 Male, age 18, unknown 472.5
2140 Male, age 76, both hemispheres 255.5
Pretectal area
nTPM: 496.6
2316 Male, age 76, right hemisphere 615.3
1815 Male, age 53, unknown 613.7
2407 Male, age 75, both hemispheres 610.6
2007 Male, age 72, unknown 577.1
1817 Female, age 42, unknown 544.0
2273 Male, age 74, both hemispheres 502.8
2825 Male, age 18, unknown 501.0
2224 Female, age 72, unknown 428.8
2667 Female, age 75, unknown 391.2
1816 Male, age 51, unknown 339.5
1944 Female, age 72, unknown 338.5
Red nucleus
nTPM: 982.4
1865 Male, age 51, unknown 1134.1
1904 Male, age 53, unknown 1093.4
1821 Female, age 72, unknown 1074.0
2769 Male, age 72, unknown 1070.1
2823 Male, age 76, right hemisphere 1034.6
2227 Male, age 72, unknown 1033.8
2503 Female, age 72, unknown 986.4
2785 Male, age 18, unknown 969.2
2588 Male, age 74, left hemisphere 920.1
1954 Female, age 42, unknown 885.1
2584 Male, age 75, left hemisphere 831.6
2725 Female, age 75, unknown 756.4
Substantia nigra
nTPM: 533.8
2583 Male, age 75, right hemisphere 818.0
2590 Female, age 75, unknown 755.5
1851 Male, age 51, unknown 612.1
1889 Female, age 72, unknown 594.6
2409 Female, age 72, unknown 539.8
1941 Male, age 53, unknown 487.6
1916 Female, age 42, unknown 430.0
2699 Male, age 18, unknown 405.3
2241 Male, age 72, unknown 385.7
2665 Male, age 74, both hemispheres 309.4
Superior colliculus
nTPM: 611.4
1913 Female, age 42, unknown 862.0
1995 Male, age 72, unknown 835.1
2587 Male, age 74, left hemisphere 727.4
2668 Female, age 75, unknown 683.0
1895 Male, age 76, right hemisphere 677.8
1839 Male, age 51, unknown 625.4
1796 Male, age 53, unknown 539.8
2261 Male, age 18, unknown 443.4
2087 Female, age 72, unknown 375.5
2664 Male, age 75, both hemispheres 344.5
Ventral tegmental area
nTPM: 679.7
2223 Female, age 72, unknown 1134.1
2410 Female, age 72, unknown 796.7
2218 Male, age 76, both hemispheres 549.3
1942 Male, age 51, unknown 544.3
2021 Male, age 53, unknown 538.0
1915 Female, age 42, unknown 516.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 478.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 478.9
Samples: 139

Max nTPM: 1725.9
Min nTPM: 109.3
Std nTPM: 275.3
Median nTPM: 418.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1725.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 1438.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1267.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1233.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 1041.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1019.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 1001.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 986.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 984.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 979.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 973.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 650.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 650.0
FF:10158-103A5 76 years, female 650.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 909.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 727.9
Samples: 4

Max nTPM: 1166.8
Min nTPM: 380.8
Sample A Female 766.2
Sample B Female 380.8
Sample C Male 597.9
Sample D Male 1166.8
Midbrain
nTPM: 909.6
Samples: 4

Max nTPM: 1849.1
Min nTPM: 525.1
Sample A Female 1849.1
Sample B Female 681.9
Sample C Male 525.1
Sample D Male 582.2
Periaqueductal gray
nTPM: 504.2
Samples: 3

Max nTPM: 558.7
Min nTPM: 440.7
Sample B Female 558.7
Sample C Male 440.7
Sample D Male 513.2
Superior colliculi
nTPM: 683.0
Samples: 4

Max nTPM: 859.3
Min nTPM: 351.6
Sample A Female 859.3
Sample B Female 351.6
Sample C Male 682.9
Sample D Male 838.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 657.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 657.5
Samples: 4

Max nTPM: 678.4
Min nTPM: 614.4
Sample A Male 667.4
Sample B Male 614.4
Sample C Female 669.6
Sample D Female 678.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 26.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 26.8
69015613 Antisense, RP_050315_01_C12, Mouse strain C57BL/6J (56 days, male) 26.8

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