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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:921.6 nTPM
FANTOM5:432.9 Scaled Tags Per Million
Pig:728.7 nTPM
Mouse:741.8 nTPM
Allen mouse:22.4 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

921.6
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 596.1
2032 Female, age 42, unknown 703.2
2396 Male, age 61, right hemisphere 573.1
2497 Male, age 66, unknown 511.9
Centromedial thalamic nucleus
nTPM: 746.9
2279 Female, age 85, left hemisphere 921.8
2401 Male, age 76, right hemisphere 572.0
Habenula
nTPM: 338.1
2203 Male, age 61, left hemisphere 456.3
2252 Male, age 62, unknown 340.2
1957 Male, age 80, both hemispheres 322.5
2276 Male, age 66, unknown 233.3
Lateral geniculate body
nTPM: 796.7
2575 Female, age 94, right hemisphere 1280.1
2841 Male, age 80, both hemispheres 984.9
2106 Female, age 67, right hemisphere 896.6
2035 Female, age 72, unknown 746.4
1953 Male, age 62, unknown 740.0
2659 Male, age 66, unknown 687.0
2399 Male, age 61, left hemisphere 573.7
2857 Male, age 74, right hemisphere 465.1
Lateral thalamic nuclei
nTPM: 682.6
2765 Female, age 67, both hemispheres 1229.2
2573 Female, age 94, left hemisphere 821.8
2661 Female, age 72, unknown 551.3
2577 Male, age 74, both hemispheres 469.0
1903 Male, age 76, left hemisphere 341.8
Medial dorsal thalamic nucleus
nTPM: 428.5
2660 Female, age 72, unknown 735.2
1859 Male, age 76, both hemispheres 523.6
2576 Male, age 74, both hemispheres 502.3
1930 Female, age 42, unknown 467.7
1810 Male, age 48, unknown 441.9
1971 Male, age 61, right hemisphere 436.8
2492 Male, age 75, right hemisphere 431.7
2402 Female, age 67, both hemispheres 401.5
2026 Male, age 62, unknown 361.1
2039 Female, age 72, unknown 354.4
2283 Male, age 80, right hemisphere 325.0
2498 Male, age 66, unknown 319.2
2572 Female, age 94, right hemisphere 269.7
Medial geniculate body
nTPM: 491.6
2571 Male, age 75, right hemisphere 589.6
2217 Female, age 72, unknown 559.3
2657 Male, age 74, right hemisphere 555.3
2207 Male, age 80, right hemisphere 525.8
2650 Female, age 94, left hemisphere 442.4
2049 Male, age 76, both hemispheres 424.3
1811 Female, age 42, unknown 344.7
Nucleus reuniens
nTPM: 863.1
2210 Female, age 85, left hemisphere 1298.9
2205 Male, age 80, left hemisphere 786.8
2212 Female, age 67, left hemisphere 503.5
Nucleus rhomboideus
nTPM: 649.9
2280 Female, age 85, left hemisphere 1160.3
2213 Female, age 67, left hemisphere 490.1
2206 Male, age 80, both hemispheres 299.3
Posterior thalamic nucleus
nTPM: 354.1
2266 Male, age 76, right hemisphere 530.6
2655 Male, age 74, right hemisphere 314.6
2495 Female, age 67, right hemisphere 299.1
2649 Female, age 94, both hemispheres 272.2
Pulvinar
nTPM: 553.3
2398 Male, age 61, left hemisphere 733.9
1972 Male, age 62, unknown 722.9
1932 Male, age 80, right hemisphere 657.9
1899 Female, age 42, unknown 601.7
2724 Male, age 74, right hemisphere 537.2
2214 Male, age 76, right hemisphere 513.5
1929 Male, age 48, unknown 503.5
2582 Female, age 72, unknown 454.3
2499 Male, age 66, unknown 436.3
2496 Female, age 67, right hemisphere 371.7
Subthalamic nucleus
nTPM: 921.6
2124 Male, age 62, unknown 1302.6
2282 Male, age 61, both hemispheres 1154.8
2056 Female, age 72, unknown 1135.9
2275 Male, age 66, unknown 1015.5
2658 Male, age 74, both hemispheres 856.3
2216 Male, age 48, unknown 855.6
2779 Female, age 42, unknown 683.7
2406 Female, age 72, unknown 368.4
Ventral posterolateral thalamic nucleus
nTPM: 640.2
2570 Male, age 75, right hemisphere 909.9
2740 Male, age 76, right hemisphere 825.1
2581 Female, age 72, unknown 664.6
2397 Male, age 61, right hemisphere 604.6
2578 Male, age 74, both hemispheres 491.6
2197 Male, age 80, both hemispheres 345.4
Ventral posteromedial thalamic nucleus
nTPM: 596.7
2281 Male, age 75, right hemisphere 1040.9
2127 Male, age 76, right hemisphere 563.2
2202 Male, age 61, left hemisphere 517.6
2653 Male, age 74, both hemispheres 508.1
2758 Male, age 80, both hemispheres 353.7
Ventral thalamic nuclei
nTPM: 670.3
2858 Female, age 72, unknown 901.8
2291 Female, age 72, unknown 783.2
2580 Male, age 66, unknown 769.4
2652 Male, age 74, left hemisphere 749.6
1845 Male, age 48, unknown 672.2
1860 Male, age 76, both hemispheres 615.4
2285 Male, age 62, unknown 540.8
1912 Female, age 42, unknown 511.8
2204 Male, age 80, both hemispheres 488.4
Zona incerta
nTPM: 759.3
2215 Male, age 66, unknown 1163.4
2822 Male, age 74, right hemisphere 968.5
2403 Male, age 62, unknown 730.4
2663 Female, age 72, unknown 562.7
2208 Male, age 80, right hemisphere 371.4

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

432.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 432.9
FF:10154-103A1 76 years, female 432.9

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

728.7
Pig sample Sample description nTPM
Thalamus
nTPM: 728.7
Samples: 4

Max nTPM: 1235.9
Min nTPM: 491.6
Sample A Female 594.8
Sample B Female 592.3
Sample C Male 491.6
Sample D Male 1235.9

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

741.8
Mouse sample Sample description nTPM
Thalamus
nTPM: 741.8
Samples: 4

Max nTPM: 795.7
Min nTPM: 702.5
Sample A Male 727.5
Sample B Male 702.5
Sample C Female 795.7
Sample D Female 741.4

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.4
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 22.4
69015613 Antisense, RP_050315_01_C12, Mouse strain C57BL/6J (56 days, male) 22.4

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