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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:505.7 nTPM
HPA Brain:481.3 nTPM
GTEx:505.7 nTPM
FANTOM5:182.7 Scaled Tags Per Million
Pig:253.7 nTPM
Mouse:316.7 nTPM
Allen mouse:2.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

481.3
Sample id Sample description nTPM
Amygdala
nTPM: 423.0
2814 Male, age 76, right hemisphere 535.9
2695 Female, age 67, right hemisphere 492.6
2517 Female, age 94, left hemisphere 386.4
2514 Male, age 75, right hemisphere 357.2
1987 Female, age 91, left hemisphere 342.6
Basal amygdala
nTPM: 443.4
2685 Female, age 94, left hemisphere 515.6
2827 Female, age 67, right hemisphere 482.6
2609 Male, age 75, right hemisphere 444.6
2110 Male, age 80, left hemisphere 420.3
1955 Male, age 76, both hemispheres 418.2
2243 Female, age 91, right hemisphere 378.8
Central amygdala
nTPM: 481.3
2826 Female, age 94, left hemisphere 731.9
1905 Male, age 76, both hemispheres 457.8
2515 Male, age 75, right hemisphere 427.8
2701 Female, age 91, right hemisphere 395.0
2239 Male, age 80, left hemisphere 394.3
Corticomedial amygdala
nTPM: 383.1
2829 Male, age 80, left hemisphere 468.0
2535 Female, age 67, right hemisphere 416.5
2428 Male, age 75, right hemisphere 378.3
2242 Female, age 91, right hemisphere 369.0
2429 Female, age 94, left hemisphere 361.6
2240 Male, age 76, both hemispheres 305.0
Lateral amygdala
nTPM: 462.1
2534 Female, age 94, left hemisphere 604.7
2830 Female, age 67, right hemisphere 467.5
1883 Male, age 76, both hemispheres 458.0
2256 Male, age 80, left hemisphere 447.9
2255 Female, age 91, right hemisphere 402.7
2516 Male, age 75, right hemisphere 392.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

505.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 505.7
Samples: 152

Max nTPM: 1253.1
Min nTPM: 146.6
Std nTPM: 153.8
Median nTPM: 495.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1253.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1189.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 934.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 869.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 810.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 810.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 808.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 751.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 736.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 726.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 708.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 690.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 686.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 681.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 661.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 655.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 653.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 646.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 645.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 640.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 640.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 631.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 627.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 623.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 613.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 612.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 608.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 608.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 608.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 603.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 602.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 596.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 591.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 584.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 581.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 581.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 581.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 580.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 580.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 579.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 578.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 577.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 575.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 570.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 564.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 564.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 561.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 560.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 559.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 547.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 547.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 545.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 542.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 536.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 532.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 529.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 527.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 526.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 524.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 522.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 520.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 519.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 518.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 517.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 515.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 515.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 514.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 512.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 508.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 503.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 501.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 498.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 498.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 498.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 498.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 496.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 495.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 490.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 490.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 490.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 489.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 488.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 486.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 482.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 482.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 480.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 480.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 470.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 467.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 467.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 465.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 463.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 461.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 457.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 454.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 452.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 449.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 447.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 446.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 441.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 438.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 434.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 430.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 426.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 425.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 425.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 423.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 420.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 419.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 418.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 416.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 413.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 411.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 409.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 407.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 403.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 396.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 395.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 395.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 395.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 393.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 382.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 379.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 378.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 377.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 376.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 373.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 372.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 370.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 368.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 367.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 360.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 357.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 355.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 354.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 353.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 348.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 347.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 345.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 341.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 336.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 317.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 306.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 303.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 299.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 287.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 269.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 267.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 254.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 254.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 175.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 146.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

182.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 182.7
FF:10151-102I7 76 years, female 182.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

253.7
Pig sample Sample description nTPM
Amygdala
nTPM: 253.7
Samples: 4

Max nTPM: 367.1
Min nTPM: 203.7
Sample A Female 367.1
Sample B Female 203.7
Sample C Male 224.5
Sample D Male 219.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

316.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 316.7
Samples: 4

Max nTPM: 340.7
Min nTPM: 293.6
Sample A Male 318.4
Sample B Male 314.0
Sample C Female 340.7
Sample D Female 293.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.7
71487112 Antisense, RP_050913_01_C07, Mouse strain C57BL/6J (56 days, male) 2.7

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