MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:382.5 nTPM
HPA Brain:444.9 nTPM
GTEx:382.5 nTPM
FANTOM5:133.5 Scaled Tags Per Million
Pig:312.0 nTPM
Mouse:141.2 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 444.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 427.9
2586 Male, age 75, left hemisphere 644.5
2666 Male, age 74, left hemisphere 533.4
1827 Male, age 72, unknown 522.8
2828 Female, age 72, unknown 464.1
2411 Female, age 72, unknown 383.2
1870 Female, age 42, unknown 373.3
1833 Male, age 53, unknown 351.9
2019 Male, age 18, unknown 345.9
1830 Male, age 51, unknown 331.9
2219 Male, age 76, both hemispheres 328.0
Dorsal raphe nucleus
nTPM: 350.3
2298 Female, age 72, unknown 374.6
2047 Male, age 72, unknown 369.5
2750 Male, age 76, both hemispheres 341.9
1828 Male, age 53, unknown 338.4
2016 Female, age 72, unknown 327.0
Inferior colliculus
nTPM: 382.2
2849 Male, age 72, unknown 428.8
1848 Female, age 42, unknown 381.8
2097 Female, age 72, unknown 367.7
1890 Male, age 53, unknown 350.6
Median raphe nucleus
nTPM: 352.9
2220 Male, age 76, midline 352.9
Periaquaductal grey, anterior
nTPM: 444.9
1795 Male, age 51, unknown 474.1
1947 Male, age 18, unknown 448.5
2502 Female, age 75, unknown 412.2
Periaquaductal grey, dorsal
nTPM: 358.7
1840 Male, age 53, unknown 396.3
2464 Female, age 72, unknown 355.7
1831 Male, age 72, unknown 352.5
2850 Male, age 76, both hemispheres 330.2
Periaquaductal grey, lateral
nTPM: 317.0
2053 Male, age 18, unknown 373.8
2140 Male, age 76, both hemispheres 307.5
2272 Male, age 74, both hemispheres 269.7
Pretectal area
nTPM: 415.6
2007 Male, age 72, unknown 532.2
1816 Male, age 51, unknown 531.6
1817 Female, age 42, unknown 491.9
1944 Female, age 72, unknown 460.8
1815 Male, age 53, unknown 456.3
2407 Male, age 75, both hemispheres 401.3
2825 Male, age 18, unknown 399.8
2667 Female, age 75, unknown 387.5
2224 Female, age 72, unknown 337.5
2316 Male, age 76, right hemisphere 303.5
2273 Male, age 74, both hemispheres 269.6
Red nucleus
nTPM: 354.4
2584 Male, age 75, left hemisphere 471.8
2588 Male, age 74, left hemisphere 433.4
2785 Male, age 18, unknown 388.3
2503 Female, age 72, unknown 366.9
2769 Male, age 72, unknown 351.2
1821 Female, age 72, unknown 339.8
2227 Male, age 72, unknown 337.7
2725 Female, age 75, unknown 335.8
1954 Female, age 42, unknown 310.0
2823 Male, age 76, right hemisphere 309.1
1865 Male, age 51, unknown 307.4
1904 Male, age 53, unknown 301.6
Substantia nigra
nTPM: 363.0
2665 Male, age 74, both hemispheres 453.1
2583 Male, age 75, right hemisphere 435.1
1889 Female, age 72, unknown 421.0
1941 Male, age 53, unknown 393.0
1916 Female, age 42, unknown 392.0
1851 Male, age 51, unknown 372.9
2590 Female, age 75, unknown 347.9
2699 Male, age 18, unknown 311.6
2409 Female, age 72, unknown 267.2
2241 Male, age 72, unknown 236.4
Superior colliculus
nTPM: 421.8
2664 Male, age 75, both hemispheres 566.1
2668 Female, age 75, unknown 503.6
1796 Male, age 53, unknown 483.5
2261 Male, age 18, unknown 438.7
2087 Female, age 72, unknown 405.5
1839 Male, age 51, unknown 387.5
1913 Female, age 42, unknown 368.6
1895 Male, age 76, right hemisphere 363.9
2587 Male, age 74, left hemisphere 362.1
1995 Male, age 72, unknown 338.8
Ventral tegmental area
nTPM: 348.7
1915 Female, age 42, unknown 382.5
1942 Male, age 51, unknown 366.9
2410 Female, age 72, unknown 346.3
2021 Male, age 53, unknown 338.5
2218 Male, age 76, both hemispheres 333.6
2223 Female, age 72, unknown 324.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 382.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 382.5
Samples: 139

Max nTPM: 762.7
Min nTPM: 217.7
Std nTPM: 81.2
Median nTPM: 375.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 762.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 669.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 559.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 548.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 535.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 533.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 532.5
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 531.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 524.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 498.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 492.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 133.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 133.5
FF:10158-103A5 76 years, female 133.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 312.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 244.2
Samples: 4

Max nTPM: 320.4
Min nTPM: 168.4
Sample A Female 320.4
Sample B Female 196.7
Sample C Male 291.2
Sample D Male 168.4
Midbrain
nTPM: 301.4
Samples: 4

Max nTPM: 367.9
Min nTPM: 244.3
Sample A Female 261.5
Sample B Female 244.3
Sample C Male 367.9
Sample D Male 332.0
Periaqueductal gray
nTPM: 229.9
Samples: 3

Max nTPM: 271.7
Min nTPM: 207.4
Sample B Female 207.4
Sample C Male 271.7
Sample D Male 210.6
Superior colliculi
nTPM: 312.0
Samples: 4

Max nTPM: 380.3
Min nTPM: 227.7
Sample A Female 380.3
Sample B Female 227.7
Sample C Male 335.5
Sample D Male 304.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 141.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 141.2
Samples: 4

Max nTPM: 171.6
Min nTPM: 116.0
Sample A Male 171.6
Sample B Male 130.6
Sample C Female 116.0
Sample D Female 146.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71487112 Antisense, RP_050913_01_C07, Mouse strain C57BL/6J (56 days, male) 0.3

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