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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:346.2 nTPM
HPA Brain:390.8 nTPM
GTEx:346.2 nTPM
FANTOM5:125.4 Scaled Tags Per Million
Pig:207.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

390.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 380.4
2565 Male, age 75, midline 505.2
2194 Female, age 79, both hemispheres 403.7
2816 Male, age 47, midline 374.1
1981 Female, age 72, midline 330.1
2048 Male, age 55, midline 289.0
Cervical spinal cord, dorsal horn
nTPM: 329.6
1877 Male, age 55, unknown 371.9
2297 Male, age 75, both hemispheres 370.9
2173 Female, age 72, unknown 327.7
2721 Male, age 90, both hemispheres 308.4
2296 Male, age 66, both hemispheres 306.7
2069 Male, age 47, both hemispheres 291.7
Cervical spinal cord, ventral horn
nTPM: 390.8
2480 Male, age 75, both hemispheres 460.7
2820 Female, age 79, both hemispheres 452.6
2809 Male, age 90, both hemispheres 392.1
2068 Male, age 55, unknown 390.0
2295 Male, age 66, both hemispheres 379.9
2098 Female, age 72, unknown 269.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

346.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 346.2
Samples: 159

Max nTPM: 589.1
Min nTPM: 182.1
Std nTPM: 69.8
Median nTPM: 346.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 589.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 543.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 521.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 513.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 499.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 482.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 480.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 470.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 469.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 465.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 457.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 457.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 452.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 445.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 438.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 435.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 433.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 426.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 424.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 424.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 420.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 418.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 418.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 410.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 410.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 409.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 407.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 407.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 406.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 404.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 403.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 403.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 399.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 399.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 395.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 393.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 391.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 390.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 389.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 386.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 384.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 382.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 378.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 378.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 375.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 374.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 372.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 372.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 371.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 371.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 368.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 367.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 366.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 364.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 364.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 363.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 363.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 362.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 362.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 361.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 361.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 360.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 359.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 358.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 356.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 356.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 355.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 354.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 354.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 353.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 353.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 351.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 351.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 351.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 349.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 349.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 348.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 348.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 347.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 346.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 345.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 345.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 344.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 343.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 341.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 340.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 339.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 337.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 336.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 336.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 335.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 333.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 332.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 330.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 330.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 329.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 329.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 328.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 327.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 325.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 324.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 323.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 322.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 321.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 320.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 319.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 317.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 316.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 314.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 309.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 305.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 301.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 300.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 299.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 299.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 298.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 297.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 296.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 295.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 294.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 293.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 293.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 292.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 291.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 291.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 290.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 289.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 287.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 284.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 282.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 282.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 280.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 275.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 275.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 274.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 271.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 271.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 270.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 267.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 265.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 264.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 261.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 259.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 259.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 259.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 258.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 252.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 252.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 250.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 247.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 240.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 234.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 233.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 230.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 218.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 216.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 214.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 209.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 182.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

125.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 125.4
FF:10181-103D1 60 years, female 150.0
FF:10159-103A6 76 years, female 100.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

207.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 207.4
Samples: 4

Max nTPM: 224.5
Min nTPM: 184.3
Sample A Female 224.5
Sample B Female 184.3
Sample C Male 206.8
Sample D Male 213.9
Ventral spinal cord
nTPM: 200.6
Samples: 4

Max nTPM: 206.1
Min nTPM: 193.1
Sample A Female 193.1
Sample B Female 199.2
Sample C Male 206.1
Sample D Male 203.9

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