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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:3293.9 nTPM
GTEx:3293.9 nTPM
FANTOM5:22513.8 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA000497Antibody CAB004439Antibody CAB047331
Squamous epithelial cells HighHighHigh






VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3293.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 3293.9
Samples: 156

Max nTPM: 12098.4
Min nTPM: 460.1
Std nTPM: 2245.2
Median nTPM: 2880.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 12098.4
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 11238.2
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 10218.1
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 8284.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 8175.3
GTEX-11I78-2026-SM-5987C 50-59 years, female 7800.0
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 7790.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 7729.6
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 7478.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 7430.4
GTEX-S341-1226-SM-4AD5S 40-49 years, female 7309.6
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 7283.3
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 6562.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 6514.5
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 6411.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 6060.7
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 6009.3
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 6000.1
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 5881.0
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 5650.6
GTEX-14PKU-1326-SM-6871B 40-49 years, female 5618.7
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 5509.3
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 5416.1
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 5414.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 5314.4
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 5224.8
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 5138.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 5114.9
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 5054.5
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 4978.8
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 4900.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 4883.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 4852.0
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 4782.7
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 4740.2
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 4621.7
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 4568.9
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 4506.1
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 4497.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 4417.7
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 4401.2
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 4380.2
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 4341.5
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 4330.0
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 4305.9
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 4286.9
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 4231.8
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 4214.8
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 4194.5
GTEX-QCQG-1226-SM-48U23 50-59 years, female 4187.5
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 4177.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 4152.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 4046.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 4028.2
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 4020.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 3922.3
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 3863.6
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 3863.2
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 3761.4
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 3753.7
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 3680.6
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 3660.4
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 3647.5
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 3637.3
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 3625.8
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 3569.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 3537.7
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 3397.5
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 3381.2
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 3377.1
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 3347.8
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 3337.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 3289.8
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 3254.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 3228.0
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 3223.2
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 3180.3
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 2949.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 2812.1
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 2752.8
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2740.0
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 2739.0
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2735.1
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 2708.7
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 2689.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 2651.5
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 2572.1
GTEX-1C475-0526-SM-793AC 40-49 years, female 2565.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 2509.2
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 2491.8
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 2454.4
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 2268.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 2263.2
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 2234.1
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2210.1
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 2199.3
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 2115.1
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2038.8
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 2022.1
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1936.5
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1928.3
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1912.9
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1892.1
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1778.8
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1744.1
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1727.7
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1727.7
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1686.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1680.9
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 1651.1
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1603.6
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1601.4
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1537.0
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1520.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1497.6
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1467.3
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1399.7
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1385.1
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1368.9
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1313.2
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1259.5
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1222.0
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1210.9
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1173.4
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1165.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1150.1
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 1150.0
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1142.5
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1131.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1109.4
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1076.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1072.7
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1035.6
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1011.9
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1003.3
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 973.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 955.1
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 945.7
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 918.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 896.5
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 888.6
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 868.4
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 815.5
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 794.4
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 765.0
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 710.0
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 698.0
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 697.9
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 680.7
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 668.5
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 628.7
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 568.3
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 562.6
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 528.6
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 510.6
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 460.1
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

22513.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 22513.8
FF:10204-103F6 68 years, female 22513.8

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