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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
222.3
Sample id
Sample description
nTPM
Amygdala nTPM: 119.5
2517
Female, age 94, left hemisphere
161.8
2814
Male, age 76, right hemisphere
142.5
1987
Female, age 91, left hemisphere
128.1
2514
Male, age 75, right hemisphere
103.5
2695
Female, age 67, right hemisphere
61.4
Basal amygdala nTPM: 222.3
2243
Female, age 91, right hemisphere
302.5
2685
Female, age 94, left hemisphere
252.8
2110
Male, age 80, left hemisphere
227.6
2827
Female, age 67, right hemisphere
211.5
2609
Male, age 75, right hemisphere
179.5
1955
Male, age 76, both hemispheres
160.2
Central amygdala nTPM: 156.6
2826
Female, age 94, left hemisphere
266.7
2239
Male, age 80, left hemisphere
192.2
1905
Male, age 76, both hemispheres
125.1
2515
Male, age 75, right hemisphere
104.8
2701
Female, age 91, right hemisphere
94.3
Corticomedial amygdala nTPM: 210.3
2242
Female, age 91, right hemisphere
267.3
2829
Male, age 80, left hemisphere
249.6
2535
Female, age 67, right hemisphere
235.6
2429
Female, age 94, left hemisphere
189.1
2428
Male, age 75, right hemisphere
176.0
2240
Male, age 76, both hemispheres
144.0
Lateral amygdala nTPM: 178.5
2534
Female, age 94, left hemisphere
335.4
2256
Male, age 80, left hemisphere
211.3
1883
Male, age 76, both hemispheres
149.2
2255
Female, age 91, right hemisphere
141.0
2830
Female, age 67, right hemisphere
123.7
2516
Male, age 75, right hemisphere
110.4
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
219.6
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 219.6
Samples: 152
Max nTPM: 658.8
Min nTPM: 9.9
Std nTPM: 112.4
Median nTPM: 204.7
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
658.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
658.2
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
473.7
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
464.5
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
460.5
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
459.4
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
443.8
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
418.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
416.6
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
407.3
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
396.9
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
388.5
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
385.3
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
373.8
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
367.5
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
363.9
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
362.4
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
362.3
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
359.4
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
349.6
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
345.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
339.9
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
336.3
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
334.7
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
327.2
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
326.1
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
323.0
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
319.7
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
308.7
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
298.1
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
296.8
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
296.4
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
293.0
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
292.5
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
292.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
286.4
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
277.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
275.9
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
273.8
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
272.9
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
270.6
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
269.3
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
268.5
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
267.7
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
266.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
264.9
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
256.9
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
256.5
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
254.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
254.7
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
253.8
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
252.3
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
252.3
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
250.4
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
250.4
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
247.9
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
242.5
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
239.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
237.9
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
233.7
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
233.1
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
232.2
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
228.6
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
227.8
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
227.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
218.7
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
215.5
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
215.4
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
213.9
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
213.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
212.1
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
209.7
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
206.5
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
206.1
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
205.8
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
205.4
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
203.9
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
201.9
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
201.7
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
201.3
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
200.3
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
197.6
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
197.1
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
195.2
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
194.9
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
193.3
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
193.2
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
183.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
182.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
180.4
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
176.1
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
174.8
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
171.6
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
171.4
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
171.4
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
163.6
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
163.3
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
162.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
159.8
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
158.3
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
153.6
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
150.5
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
149.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
148.0
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
146.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
145.2
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
142.1
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
141.3
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
139.3
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
135.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
135.3
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
134.2
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
131.8
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
131.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
130.8
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
130.2
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
128.9
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
127.7
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
127.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
125.2
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
124.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
122.0
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
121.6
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
121.4
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
119.1
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
118.3
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
114.7
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
114.2
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
113.1
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
111.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
111.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
109.7
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
108.4
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
105.9
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
104.1
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
103.5
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
102.1
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
100.5
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
99.6
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
96.4
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
95.0
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
85.4
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
83.6
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
82.2
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
78.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
67.6
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
64.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
57.5
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
55.6
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
50.7
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
21.3
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
9.9
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
282.2
Mouse sample
Sample description
nTPM
Amygdala nTPM: 282.3
Samples: 4
Max nTPM: 318.2
Min nTPM: 259.2
Sample A
Male
263.5
Sample B
Male
288.1
Sample C
Female
318.2
Sample D
Female
259.2
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
