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  • RUNDC3A
BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Neuronal projections: High
Synapses: Not detected
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

83.953
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:242.3 nTPM
HPA Brain:262.6 nTPM
GTEx:242.3 nTPM
FANTOM5:117.9 Scaled Tags Per Million
Pig:267.2 nTPM
Mouse:244.3 nTPM
Allen mouse:9.5 Expression energy

HIPPOCAMPUS - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA023548
Glial cells Not detected
Neuronal cells Not detected
Neuronal projections High
Synapses Not detected

HIPPOCAMPUS - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA070733
Glial cells Not detected
Neuronal cells Not detected
Neuronal projections High
Synapses Not detected

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA023548Antibody HPA070733
Glial cells Not detectedNot detected
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA023548
Hippocampal formation mean intensity 83.953
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 81.021
Molecular layer of the dentate gyrus 35.007
Granular dentate gyrus 63.724
CA1 - oriens layer 38.555
CA1 - pyramidal layer 62.882
CA1 - radiatum layer 45.269
CA2 - oriens layer 42.197
CA2 - pyramidal layer 70.561
CA2 - radiatum layer 47.229
CA3 - oriens layer 46.603
CA3 - pyramidal layer 83.953
CA3 - radiatum layer 51.753
Stratum lucidum 67.786
Lacunosum moleculare 33.498
Subiculum 73.197

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

262.6
Sample id Sample description nTPM
Hippocampus
nTPM: 248.9
2621 Female, age 67, right hemisphere 308.2
2148 Female, age 91, left hemisphere 276.3
1898 Male, age 80, left hemisphere 272.6
2529 Female, age 94, left hemisphere 230.3
1855 Male, age 76, left hemisphere 212.6
1911 Female, age 85, right hemisphere 193.4
Dentate gyrus
nTPM: 252.2
2531 Female, age 67, both hemispheres 332.6
1927 Female, age 91, both hemispheres 294.5
2530 Female, age 94, left hemisphere 280.8
2528 Male, age 74, both hemispheres 213.3
2246 Female, age 85, both hemispheres 199.7
2010 Male, age 76, both hemispheres 192.4
Entorhinal gyrus
nTPM: 189.6
2613 Female, age 94, left hemisphere 235.0
2764 Male, age 80, right hemisphere 223.7
1787 Male, age 76, left hemisphere 199.5
1938 Female, age 85, left hemisphere 184.8
2686 Male, age 75, right hemisphere 163.9
2117 Female, age 91, right hemisphere 130.8
Hippocampus, CA1
nTPM: 260.0
2749 Male, age 80, left hemisphere 393.0
2527 Male, age 74, both hemispheres 257.7
1873 Female, age 85, both hemispheres 222.2
2082 Female, age 91, right hemisphere 217.1
2045 Male, age 76, both hemispheres 209.9
Hippocampus, CA2
nTPM: 241.9
1963 Male, age 80, left hemisphere 331.5
1892 Male, age 76, both hemispheres 246.9
2113 Female, age 91, right hemisphere 240.7
2437 Female, age 94, left hemisphere 240.1
1940 Female, age 85, left hemisphere 209.8
2249 Male, age 74, both hemispheres 182.2
Hippocampus, CA3
nTPM: 258.8
2137 Male, age 80, left hemisphere 365.2
2861 Female, age 67, both hemispheres 360.9
2620 Female, age 94, left hemisphere 297.6
1867 Male, age 76, both hemispheres 189.5
2436 Male, age 74, both hemispheres 181.9
1891 Female, age 85, both hemispheres 157.6
Parahippocampal cortex
nTPM: 212.0
2245 Female, age 91, both hemispheres 328.2
2250 Female, age 67, right hemisphere 243.1
2622 Female, age 67, right hemisphere 221.3
1850 Male, age 80, both hemispheres 218.0
1990 Female, age 91, right hemisphere 202.5
1933 Female, age 85, both hemispheres 197.3
2693 Female, age 94, both hemispheres 196.0
2532 Female, age 72, left hemisphere 187.7
2018 Male, age 76, both hemispheres 184.8
2692 Male, age 74, both hemispheres 140.6
Perirhinal gyrus
nTPM: 262.6
2521 Female, age 94, right hemisphere 314.6
1847 Female, age 91, left hemisphere 304.9
1794 Male, age 80, right hemisphere 281.9
1841 Female, age 85, right hemisphere 223.5
2848 Male, age 76, right hemisphere 188.3
Subiculum
nTPM: 171.7
1901 Male, age 80, both hemispheres 191.2
2729 Female, age 91, right hemisphere 191.2
1977 Female, age 85, both hemispheres 184.5
2438 Female, age 94, left hemisphere 165.5
2619 Male, age 74, both hemispheres 162.4
2042 Male, age 76, both hemispheres 135.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

242.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 242.3
Samples: 197

Max nTPM: 918.0
Min nTPM: 18.8
Std nTPM: 129.2
Median nTPM: 245.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 918.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 627.0
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 587.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 506.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 490.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 486.7
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 482.7
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 480.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 474.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 467.4
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 456.3
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 451.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 449.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 441.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 436.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 416.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 405.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 405.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 402.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 390.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 388.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 386.8
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 383.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 368.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 363.8
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 363.6
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 363.3
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 361.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 358.8
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 353.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 352.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 351.8
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 349.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 349.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 346.4
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 342.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 342.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 339.7
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 337.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 335.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 333.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 330.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 327.3
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 326.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 324.9
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 322.7
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 322.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 322.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 321.7
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 320.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 319.0
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 316.7
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 313.7
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 312.4
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 311.2
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 308.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 306.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 306.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 305.8
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 305.5
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 303.8
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 303.4
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 302.4
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 302.0
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 296.5
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 294.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 294.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 292.2
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 287.3
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 283.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 275.1
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 273.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 273.7
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 272.7
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 272.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 271.4
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 269.2
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 268.8
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 266.3
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 264.7
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 261.6
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 261.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 259.5
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 259.0
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 257.7
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 257.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 257.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 256.9
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 256.3
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 255.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 254.9
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 254.0
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 253.6
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 251.2
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 250.9
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 248.6
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 246.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 246.5
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 245.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 239.3
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 239.0
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 238.4
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 237.5
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 235.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 234.6
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 233.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 232.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 232.4
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 232.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 230.7
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 229.9
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 228.9
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 227.3
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 225.7
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 223.8
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 221.2
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 219.0
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 218.4
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 215.4
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 213.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 209.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 208.8
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 207.7
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 205.8
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 201.3
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 201.3
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 196.2
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 195.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 194.4
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 190.8
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 189.6
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 187.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 182.8
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 175.5
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 165.3
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 164.5
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 161.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 160.0
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 158.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 157.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 155.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 154.9
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 154.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 152.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 152.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 152.3
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 150.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 150.8
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 149.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 145.4
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 144.5
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 143.1
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 139.4
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 139.4
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 135.9
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 135.8
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 128.6
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 122.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 121.2
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 119.7
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 119.7
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 119.0
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 107.1
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 97.7
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 94.9
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 92.5
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 88.0
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 87.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 86.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 85.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 85.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 84.9
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 80.7
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 80.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 79.7
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 77.4
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 77.0
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 75.7
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 67.6
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 67.5
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 67.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 66.2
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 64.2
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 60.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 58.0
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 52.0
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 51.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 50.6
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 50.5
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 49.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 48.7
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 47.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 45.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 43.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 39.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 25.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 18.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

117.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 117.9
FF:10169-103B7 60 years, female 135.0
FF:10153-102I9 76 years, female 100.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

267.2
Pig sample Sample description nTPM
Subiculum
nTPM: 205.2
Samples: 4

Max nTPM: 294.5
Min nTPM: 163.9
Sample A Female 294.5
Sample B Female 190.8
Sample C Male 171.4
Sample D Male 163.9
Dorsal hippocampus
nTPM: 204.8
Samples: 4

Max nTPM: 252.9
Min nTPM: 142.7
Sample A Female 252.9
Sample B Female 210.9
Sample C Male 212.5
Sample D Male 142.7
Entorhinal cortex
nTPM: 267.2
Samples: 4

Max nTPM: 303.6
Min nTPM: 233.1
Sample A Female 238.9
Sample B Female 293.3
Sample C Male 303.6
Sample D Male 233.1
Ventral hippocampus
nTPM: 183.1
Samples: 4

Max nTPM: 211.8
Min nTPM: 143.9
Sample A Female 170.4
Sample B Female 143.9
Sample C Male 206.1
Sample D Male 211.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

244.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 244.3
Samples: 4

Max nTPM: 259.5
Min nTPM: 234.2
Sample A Male 242.2
Sample B Male 259.5
Sample C Female 234.2
Sample D Female 241.1
Hippocampal formation
nTPM: 218.3
Samples: 4

Max nTPM: 234.8
Min nTPM: 200.1
Sample A Male 234.8
Sample B Male 216.5
Sample C Female 200.1
Sample D Female 221.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.5
68745366 Antisense, RP_050210_01_G09, Mouse strain C57BL/6J (56 days, male) 9.5

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