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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Mouse brain, Intensity
Thalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

129.514
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:140.3 nTPM
FANTOM5:29.7 Scaled Tags Per Million
Pig:188.8 nTPM
Mouse:163.6 nTPM
Allen mouse:8.4 Expression energy

THALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA023548
Thalamus mean intensity 129.514
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Medial geniculate nucleus 22.820
Parafascicular thalamic nucleus 41.911
Pregeniculate nucleus 40.786
Stria terminalis 49.162
Zona incerta 29.553
Anterodorsal thalamic nucleus 90.260
Reticular thalamic nucleus 26.006
Vental anterior thalamic nucleus -
Medial habenular nucleus 64.767
Laterodorsal thalamic area 50.913
Paraventricular thalamic nucleus 129.514
Central medial thalamic area 44.402
Ventral lateral thalamic area -
Ventral medial thalamic area 30.857
Lateral habenulal nucleus 45.466
Ventral posterior thalamus 35.601
Anterior pretactal nucleus 24.101
Retromammillary nucleus 42.132

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

140.3
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 93.6
2032 Female, age 42, unknown 134.5
2497 Male, age 66, unknown 101.3
2396 Male, age 61, right hemisphere 45.0
Centromedial thalamic nucleus
nTPM: 97.5
2401 Male, age 76, right hemisphere 145.8
2279 Female, age 85, left hemisphere 49.3
Habenula
nTPM: 132.9
1957 Male, age 80, both hemispheres 156.8
2203 Male, age 61, left hemisphere 148.1
2276 Male, age 66, unknown 123.3
2252 Male, age 62, unknown 103.5
Lateral geniculate body
nTPM: 117.6
2106 Female, age 67, right hemisphere 200.7
2399 Male, age 61, left hemisphere 163.3
1953 Male, age 62, unknown 139.7
2035 Female, age 72, unknown 135.7
2857 Male, age 74, right hemisphere 102.9
2659 Male, age 66, unknown 81.4
2841 Male, age 80, both hemispheres 65.2
2575 Female, age 94, right hemisphere 52.1
Lateral thalamic nuclei
nTPM: 112.0
2577 Male, age 74, both hemispheres 147.8
1903 Male, age 76, left hemisphere 143.7
2661 Female, age 72, unknown 122.2
2765 Female, age 67, both hemispheres 81.1
2573 Female, age 94, left hemisphere 65.0
Medial dorsal thalamic nucleus
nTPM: 127.6
2492 Male, age 75, right hemisphere 167.8
1859 Male, age 76, both hemispheres 162.6
2498 Male, age 66, unknown 158.7
1810 Male, age 48, unknown 156.8
2283 Male, age 80, right hemisphere 151.8
1971 Male, age 61, right hemisphere 137.2
2026 Male, age 62, unknown 127.8
2576 Male, age 74, both hemispheres 125.2
1930 Female, age 42, unknown 110.1
2402 Female, age 67, both hemispheres 99.8
2660 Female, age 72, unknown 99.7
2039 Female, age 72, unknown 91.1
2572 Female, age 94, right hemisphere 70.8
Medial geniculate body
nTPM: 111.2
1811 Female, age 42, unknown 155.3
2207 Male, age 80, right hemisphere 127.0
2657 Male, age 74, right hemisphere 108.4
2571 Male, age 75, right hemisphere 104.6
2650 Female, age 94, left hemisphere 103.3
2217 Female, age 72, unknown 101.3
2049 Male, age 76, both hemispheres 78.3
Nucleus reuniens
nTPM: 84.0
2212 Female, age 67, left hemisphere 122.5
2205 Male, age 80, left hemisphere 81.5
2210 Female, age 85, left hemisphere 48.1
Nucleus rhomboideus
nTPM: 86.4
2206 Male, age 80, both hemispheres 165.5
2280 Female, age 85, left hemisphere 48.4
2213 Female, age 67, left hemisphere 45.5
Posterior thalamic nucleus
nTPM: 107.4
2266 Male, age 76, right hemisphere 138.8
2655 Male, age 74, right hemisphere 115.5
2495 Female, age 67, right hemisphere 101.2
2649 Female, age 94, both hemispheres 74.2
Pulvinar
nTPM: 131.9
2398 Male, age 61, left hemisphere 164.0
1972 Male, age 62, unknown 154.3
2496 Female, age 67, right hemisphere 139.8
2582 Female, age 72, unknown 138.7
1932 Male, age 80, right hemisphere 136.3
1929 Male, age 48, unknown 123.7
2214 Male, age 76, right hemisphere 122.2
1899 Female, age 42, unknown 119.5
2499 Male, age 66, unknown 112.6
2724 Male, age 74, right hemisphere 108.1
Subthalamic nucleus
nTPM: 95.7
2658 Male, age 74, both hemispheres 125.5
2275 Male, age 66, unknown 116.7
2282 Male, age 61, both hemispheres 109.5
2406 Female, age 72, unknown 102.0
2124 Male, age 62, unknown 97.3
2779 Female, age 42, unknown 79.9
2056 Female, age 72, unknown 68.3
2216 Male, age 48, unknown 66.5
Ventral posterolateral thalamic nucleus
nTPM: 133.8
2740 Male, age 76, right hemisphere 165.9
2578 Male, age 74, both hemispheres 153.3
2197 Male, age 80, both hemispheres 139.8
2397 Male, age 61, right hemisphere 127.5
2581 Female, age 72, unknown 118.3
2570 Male, age 75, right hemisphere 97.9
Ventral posteromedial thalamic nucleus
nTPM: 140.3
2653 Male, age 74, both hemispheres 177.6
2758 Male, age 80, both hemispheres 168.9
2202 Male, age 61, left hemisphere 158.5
2281 Male, age 75, right hemisphere 102.9
2127 Male, age 76, right hemisphere 93.8
Ventral thalamic nuclei
nTPM: 115.3
2858 Female, age 72, unknown 137.9
1860 Male, age 76, both hemispheres 137.6
1845 Male, age 48, unknown 132.6
1912 Female, age 42, unknown 124.9
2652 Male, age 74, left hemisphere 122.1
2285 Male, age 62, unknown 114.5
2204 Male, age 80, both hemispheres 106.0
2580 Male, age 66, unknown 82.0
2291 Female, age 72, unknown 80.2
Zona incerta
nTPM: 86.7
2208 Male, age 80, right hemisphere 120.5
2822 Male, age 74, right hemisphere 85.1
2663 Female, age 72, unknown 82.5
2215 Male, age 66, unknown 81.6
2403 Male, age 62, unknown 63.7

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

29.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 29.7
FF:10154-103A1 76 years, female 29.7

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

188.8
Pig sample Sample description nTPM
Thalamus
nTPM: 188.8
Samples: 4

Max nTPM: 265.1
Min nTPM: 85.2
Sample A Female 262.1
Sample B Female 142.7
Sample C Male 265.1
Sample D Male 85.2

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

163.6
Mouse sample Sample description nTPM
Thalamus
nTPM: 163.6
Samples: 4

Max nTPM: 173.7
Min nTPM: 156.4
Sample A Male 167.3
Sample B Male 156.4
Sample C Female 173.7
Sample D Female 156.9

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.4
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 8.4
68745366 Antisense, RP_050210_01_G09, Mouse strain C57BL/6J (56 days, male) 8.4

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