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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:140.4 nTPM
FANTOM5:215.8 Scaled Tags Per Million
Pig:0.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB037134Antibody CAB037140
Glial cells Not detectedNot detected
Neuronal cells LowLow




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

140.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 140.4
Samples: 246

Max nTPM: 358.4
Min nTPM: 56.4
Std nTPM: 35.4
Median nTPM: 136.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 358.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 276.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 268.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 244.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 238.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 230.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 216.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 216.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 212.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 205.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 202.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 200.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 198.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 197.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 193.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 192.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 189.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 187.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 187.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 186.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 186.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 183.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 183.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 181.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 181.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 177.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 176.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 175.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 175.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 175.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 173.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 173.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 172.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 172.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 172.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 172.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 171.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 169.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 169.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 168.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 168.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 167.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 166.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 166.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 166.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 164.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 164.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 163.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 163.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 163.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 161.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 160.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 160.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 160.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 159.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 159.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 159.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 158.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 158.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 158.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 157.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 156.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 155.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 155.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 155.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 155.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 154.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 154.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 153.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 152.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 152.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 152.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 152.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 152.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 151.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 150.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 150.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 149.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 149.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 149.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 149.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 149.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 149.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 149.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 149.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 148.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 148.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 147.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 146.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 146.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 146.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 146.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 146.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 145.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 145.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 145.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 144.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 143.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 143.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 142.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 142.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 142.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 141.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 141.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 141.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 140.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 140.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 139.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 139.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 139.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 139.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 139.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 138.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 138.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 138.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 138.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 138.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 137.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 137.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 136.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 136.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 136.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 136.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 135.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 135.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 135.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 135.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 134.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 134.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 134.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 133.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 133.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 133.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 133.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 132.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 132.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 132.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 132.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 132.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 131.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 131.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 131.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 131.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 131.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 130.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 130.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 130.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 130.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 129.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 129.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 129.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 128.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 128.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 128.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 127.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 127.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 127.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 126.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 126.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 125.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 125.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 125.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 125.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 125.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 123.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 123.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 123.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 123.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 123.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 123.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 122.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 122.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 121.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 121.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 121.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 121.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 121.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 120.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 120.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 120.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 119.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 119.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 118.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 118.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 117.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 117.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 117.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 117.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 117.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 117.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 116.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 116.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 115.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 115.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 115.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 115.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 114.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 114.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 113.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 113.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 113.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 111.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 110.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 110.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 110.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 110.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 109.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 109.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 108.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 107.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 107.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 107.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 107.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 106.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 105.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 104.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 104.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 104.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 104.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 104.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 103.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 103.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 102.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 101.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 99.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 99.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 98.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 97.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 97.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 97.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 96.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 95.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 94.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 94.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 94.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 92.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 92.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 91.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 90.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 89.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 83.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 82.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 78.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 74.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 64.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 56.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

215.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 215.8
FF:10164-103B2 76 years, female 215.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.4
Pig sample Sample description nTPM
Caudate
nTPM: 0.4
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 0.3
Sample C Male 0.6
Sample D Male 0.5

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