MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:208.9 nTPM
HPA Brain:276.8 nTPM
GTEx:208.9 nTPM
FANTOM5:367.2 Scaled Tags Per Million
Pig:0.6 nTPM
Mouse:119.4 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 276.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 240.1
2828 Female, age 72, unknown 258.4
2019 Male, age 18, unknown 250.3
1833 Male, age 53, unknown 249.8
2666 Male, age 74, left hemisphere 246.9
1870 Female, age 42, unknown 246.7
2411 Female, age 72, unknown 244.7
2586 Male, age 75, left hemisphere 242.8
1830 Male, age 51, unknown 236.9
1827 Male, age 72, unknown 216.6
2219 Male, age 76, both hemispheres 207.8
Dorsal raphe nucleus
nTPM: 240.2
2750 Male, age 76, both hemispheres 276.2
2298 Female, age 72, unknown 242.2
2047 Male, age 72, unknown 237.6
1828 Male, age 53, unknown 232.2
2016 Female, age 72, unknown 213.0
Inferior colliculus
nTPM: 199.0
1890 Male, age 53, unknown 216.3
2097 Female, age 72, unknown 196.5
1848 Female, age 42, unknown 193.1
2849 Male, age 72, unknown 190.1
Median raphe nucleus
nTPM: 264.3
2220 Male, age 76, midline 264.3
Periaquaductal grey, anterior
nTPM: 205.1
1795 Male, age 51, unknown 216.3
1947 Male, age 18, unknown 209.2
2502 Female, age 75, unknown 189.7
Periaquaductal grey, dorsal
nTPM: 192.2
2850 Male, age 76, both hemispheres 232.4
1831 Male, age 72, unknown 205.5
2464 Female, age 72, unknown 181.7
1840 Male, age 53, unknown 149.4
Periaquaductal grey, lateral
nTPM: 211.9
2272 Male, age 74, both hemispheres 251.6
2140 Male, age 76, both hemispheres 200.1
2053 Male, age 18, unknown 184.2
Pretectal area
nTPM: 221.8
2007 Male, age 72, unknown 257.2
1817 Female, age 42, unknown 254.6
1815 Male, age 53, unknown 251.8
1944 Female, age 72, unknown 226.4
2316 Male, age 76, right hemisphere 225.5
1816 Male, age 51, unknown 225.4
2273 Male, age 74, both hemispheres 213.4
2224 Female, age 72, unknown 202.1
2667 Female, age 75, unknown 199.1
2825 Male, age 18, unknown 194.7
2407 Male, age 75, both hemispheres 189.9
Red nucleus
nTPM: 266.9
1904 Male, age 53, unknown 289.6
2725 Female, age 75, unknown 289.1
1865 Male, age 51, unknown 285.7
2823 Male, age 76, right hemisphere 283.5
2503 Female, age 72, unknown 278.7
2769 Male, age 72, unknown 278.4
1821 Female, age 72, unknown 275.6
2227 Male, age 72, unknown 274.1
2785 Male, age 18, unknown 272.7
1954 Female, age 42, unknown 261.3
2584 Male, age 75, left hemisphere 212.7
2588 Male, age 74, left hemisphere 201.6
Substantia nigra
nTPM: 276.8
1916 Female, age 42, unknown 380.2
2699 Male, age 18, unknown 328.5
1851 Male, age 51, unknown 312.9
2590 Female, age 75, unknown 271.5
2665 Male, age 74, both hemispheres 265.4
1941 Male, age 53, unknown 263.8
2583 Male, age 75, right hemisphere 253.0
1889 Female, age 72, unknown 247.6
2409 Female, age 72, unknown 244.7
2241 Male, age 72, unknown 200.2
Superior colliculus
nTPM: 221.6
1913 Female, age 42, unknown 264.5
2587 Male, age 74, left hemisphere 258.6
1995 Male, age 72, unknown 254.2
2668 Female, age 75, unknown 241.6
1796 Male, age 53, unknown 227.7
2261 Male, age 18, unknown 214.2
2087 Female, age 72, unknown 209.5
1839 Male, age 51, unknown 195.5
1895 Male, age 76, right hemisphere 190.5
2664 Male, age 75, both hemispheres 159.8
Ventral tegmental area
nTPM: 271.5
2218 Male, age 76, both hemispheres 306.8
1915 Female, age 42, unknown 288.5
2223 Female, age 72, unknown 282.3
2410 Female, age 72, unknown 272.4
2021 Male, age 53, unknown 249.1
1942 Male, age 51, unknown 229.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 208.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 208.9
Samples: 139

Max nTPM: 415.5
Min nTPM: 89.0
Std nTPM: 53.3
Median nTPM: 199.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 415.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 368.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 351.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 344.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 326.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 317.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 315.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 311.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 311.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 300.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 296.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 367.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 367.2
FF:10158-103A5 76 years, female 367.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 0.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.3
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.7
Sample C Male 0.1
Sample D Male 0.5
Midbrain
nTPM: 0.5
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 0.3
Sample C Male 0.8
Sample D Male 0.7
Periaqueductal gray
nTPM: 0.6
Samples: 3

Max nTPM: 1.0
Min nTPM: 0.3
Sample B Female 0.5
Sample C Male 0.3
Sample D Male 1.0
Superior colliculi
nTPM: 0.5
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.8
Sample C Male 0.7
Sample D Male 0.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 119.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 119.4
Samples: 4

Max nTPM: 128.0
Min nTPM: 111.8
Sample A Male 128.0
Sample B Male 113.9
Sample C Female 111.8
Sample D Female 123.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
73514809 Antisense, RP_051121_03_B08, Mouse strain C57BL/6J (56 days, male) 2.8

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