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TISSUE PRIMARY DATA BASAL GANGLIA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Basal ganglia
BASAL GANGLIA - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:439.1 nTPM
HPA Brain:313.6 nTPM
GTEx:439.1 nTPM
FANTOM5:1093.2 Scaled Tags Per Million
Pig:1200.5 nTPM
Mouse:722.0 nTPM
Allen mouse:6.7 Expression energy

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA008445Antibody CAB016200Antibody CAB021109Antibody CAB047350
Glial cells MediumMediumMediumNot detected
Neuronal cells HighHighMediumLow









BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

313.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 295.7
2481 Female, age 94, left hemisphere 406.1
2846 Female, age 79, unknown 332.3
2288 Male, age 75, left hemisphere 328.3
2290 Female, age 72, unknown 288.0
1857 Female, age 85, left hemisphere 283.9
1854 Male, age 80, left hemisphere 261.2
1781 Male, age 74, unknown 256.3
2289 Male, age 61, right hemisphere 209.6
Globus pallidus, externus
nTPM: 287.2
2772 Female, age 79, unknown 350.3
1996 Male, age 80, right hemisphere 329.3
2395 Male, age 75, both hemispheres 324.4
2646 Male, age 61, right hemisphere 241.2
2567 Female, age 72, unknown 190.8
Globus pallidus, internus
nTPM: 292.0
2483 Female, age 94, right hemisphere 380.2
2287 Male, age 75, right hemisphere 376.9
2778 Female, age 91, both hemispheres 312.9
1818 Male, age 74, unknown 278.2
2037 Male, age 80, right hemisphere 266.0
2111 Female, age 85, right hemisphere 224.7
2566 Female, age 72, unknown 205.1
Nucleus accumbens
nTPM: 299.8
2286 Male, age 75, left hemisphere 348.6
2698 Female, age 72, unknown 347.1
2391 Female, age 94, left hemisphere 320.0
1856 Female, age 91, right hemisphere 301.6
1806 Female, age 85, left hemisphere 299.3
1783 Male, age 74, unknown 276.1
2824 Male, age 61, right hemisphere 268.3
2732 Male, age 80, right hemisphere 237.2
Nucleus basalis of Meynert
nTPM: 244.8
2821 Male, age 75, both hemispheres 266.6
2393 Male, age 80, right hemisphere 248.2
2569 Male, age 61, both hemispheres 235.9
2484 Female, age 94, left hemisphere 228.5
Nucleus of the diagonal band
nTPM: 313.6
1812 Female, age 91, both hemispheres 401.6
2775 Male, age 80, right hemisphere 345.5
2195 Female, age 85, both hemispheres 296.6
1979 Male, age 74, unknown 267.3
2029 Male, age 61, right hemisphere 256.8
Putamen
nTPM: 260.7
2482 Female, age 94, left hemisphere 331.0
2466 Female, age 79, unknown 292.4
1838 Male, age 80, right hemisphere 290.8
1937 Female, age 91, right hemisphere 277.3
1829 Male, age 74, unknown 268.9
2647 Male, age 75, left hemisphere 200.9
2489 Female, age 72, unknown 163.5
Septal nuclei
nTPM: 285.4
2031 Female, age 72, unknown 358.3
1960 Male, age 74, unknown 337.1
2629 Female, age 94, right hemisphere 296.9
2009 Female, age 91, both hemispheres 294.2
2199 Male, age 80, right hemisphere 251.6
2059 Female, age 85, both hemispheres 245.1
2394 Male, age 61, left hemisphere 214.4
Stria terminalis, bed nucleus
nTPM: 247.2
1974 Female, age 91, both hemispheres 306.4
2201 Male, age 74, unknown 226.8
2486 Female, age 94, both hemispheres 208.5

BASAL GANGLIA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

439.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 426.4
Samples: 246

Max nTPM: 909.6
Min nTPM: 258.4
Std nTPM: 84.1
Median nTPM: 413.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 909.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 809.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 788.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 749.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 727.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 726.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 660.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 595.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 584.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 575.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 559.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 555.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 553.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 551.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 545.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 542.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 536.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 534.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 523.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 522.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 522.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 517.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 515.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 511.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 507.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 506.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 500.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 499.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 499.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 494.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 493.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 490.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 489.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 488.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 487.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 485.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 485.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 485.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 484.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 482.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 480.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 477.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 477.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 475.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 474.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 472.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 470.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 470.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 468.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 467.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 465.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 464.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 464.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 462.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 462.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 461.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 461.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 461.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 460.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 460.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 460.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 459.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 458.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 455.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 454.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 453.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 453.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 452.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 452.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 452.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 452.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 450.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 450.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 449.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 448.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 448.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 447.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 447.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 446.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 446.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 442.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 441.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 440.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 440.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 440.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 439.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 439.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 437.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 437.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 436.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 434.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 434.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 433.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 433.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 433.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 432.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 432.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 432.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 429.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 428.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 427.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 425.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 425.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 425.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 425.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 425.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 424.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 424.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 424.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 422.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 422.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 420.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 419.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 417.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 417.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 417.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 416.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 416.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 416.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 415.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 415.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 414.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 413.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 412.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 412.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 411.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 411.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 410.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 410.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 410.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 410.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 409.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 409.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 409.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 408.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 408.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 407.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 406.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 405.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 405.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 404.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 404.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 404.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 403.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 403.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 403.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 401.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 401.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 401.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 400.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 400.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 400.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 399.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 399.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 398.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 398.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 398.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 398.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 397.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 397.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 396.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 396.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 395.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 395.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 394.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 392.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 391.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 390.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 390.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 389.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 389.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 389.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 388.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 388.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 386.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 386.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 385.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 385.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 383.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 383.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 381.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 380.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 380.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 377.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 377.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 377.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 374.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 374.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 372.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 372.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 371.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 371.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 371.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 370.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 370.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 369.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 368.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 368.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 366.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 366.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 363.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 363.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 363.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 362.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 361.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 360.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 360.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 359.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 357.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 357.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 356.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 356.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 355.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 353.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 352.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 352.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 351.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 350.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 350.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 349.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 347.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 346.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 344.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 342.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 341.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 341.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 340.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 332.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 329.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 329.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 329.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 322.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 321.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 321.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 314.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 314.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 308.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 307.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 299.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 296.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 295.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 292.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 289.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 285.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 279.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 258.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 433.5
Samples: 246

Max nTPM: 849.9
Min nTPM: 136.7
Std nTPM: 103.2
Median nTPM: 434.3
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 849.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 847.8
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 704.0
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 664.5
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 652.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 650.9
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 636.3
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 635.8
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 607.0
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 601.6
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 600.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 592.7
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 576.0
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 575.3
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 575.2
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 575.1
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 573.3
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 572.1
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 570.6
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 569.4
GTEX-11NUK-0011-R6a-SM-DO93O 50-59 years, male 561.7
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 560.0
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 557.2
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 555.7
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 554.8
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 551.2
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 548.7
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 547.4
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 546.7
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 546.4
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 543.4
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 542.4
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 537.6
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 537.1
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 535.6
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 532.6
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 532.3
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 531.4
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 520.6
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 519.8
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 518.0
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 517.7
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 516.9
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 515.4
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 513.2
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 512.7
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 508.8
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 508.3
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 507.7
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 506.7
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 506.6
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 504.8
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 500.8
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 499.3
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 498.8
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 498.3
GTEX-1GF9V-0011-R6b-SM-CJI2Q 60-69 years, male 496.0
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 495.6
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 495.5
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 494.8
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 494.8
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 494.6
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 493.9
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 489.7
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 488.3
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 487.7
GTEX-14ABY-0011-R6a-SM-5PNWR 50-59 years, male 486.8
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 486.8
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 485.9
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 480.6
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 478.5
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 478.0
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 475.6
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 474.4
GTEX-11DXY-0011-R6a-SM-DNZZF 60-69 years, male 474.3
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 473.8
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 473.2
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 472.8
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 471.9
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 471.7
GTEX-1N2DW-0011-R6a-SM-EZ6MW 50-59 years, male 471.7
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 471.4
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 471.4
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 471.3
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 471.0
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 469.4
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 466.7
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 466.0
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 465.2
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 465.0
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 464.3
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 461.4
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 455.2
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 455.0
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 454.9
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 454.7
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 454.3
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 454.1
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 453.1
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 452.9
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 451.1
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 450.9
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 449.6
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 449.2
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 448.4
GTEX-Y8DK-0011-R6A-SM-4V6EG 60-69 years, male 448.3
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 447.1
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 446.8
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 444.7
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 444.5
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 443.6
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 442.6
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 442.3
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 441.3
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 441.0
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 439.9
GTEX-N7MT-0011-R6a-SM-2I3G3 60-69 years, female 439.2
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 437.3
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 437.1
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 436.9
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 435.1
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 434.6
GTEX-14JG1-0011-R6b-SM-5YYAU 40-49 years, male 434.5
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 434.0
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 433.4
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 433.4
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 432.9
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 430.7
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 430.3
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 430.3
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 429.9
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 429.0
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 428.5
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 428.1
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 428.1
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 427.1
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 426.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 426.2
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 426.1
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 425.2
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 423.4
GTEX-1H1CY-0011-R6b-SM-CE6RP 60-69 years, female 422.2
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 421.8
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 421.2
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 419.7
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 419.7
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 418.6
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 416.9
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 415.3
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 414.4
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 413.8
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 411.4
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 410.9
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 410.4
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 406.8
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 406.5
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 404.8
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 403.0
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 402.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 401.5
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 400.8
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 400.5
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 399.4
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 399.0
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 398.5
GTEX-147GR-0011-R6b-SM-5S2RO 60-69 years, male 397.4
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 396.3
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 395.4
GTEX-1CB4G-0011-R6b-SM-9QEGO 60-69 years, male 394.9
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 394.3
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 394.0
GTEX-ZXG5-0011-R6a-SM-57WBZ 60-69 years, male 393.7
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 393.4
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 393.1
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 393.0
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 392.7
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 389.4
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 388.7
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 388.3
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 382.6
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 380.4
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 378.2
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 377.9
GTEX-1HGF4-0011-R6a-SM-A96S1 60-69 years, male 377.4
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 376.4
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 372.6
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 371.9
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 370.9
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 370.2
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 368.8
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 368.7
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 368.1
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 367.8
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 367.3
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 363.8
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 360.3
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 358.0
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 357.3
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 356.0
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 356.0
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 354.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 354.7
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 352.6
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 352.5
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 352.3
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 350.9
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 348.1
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 346.1
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 344.4
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 344.0
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 343.5
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 342.3
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 336.6
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 335.8
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 328.3
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 327.9
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 326.2
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 324.8
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 322.3
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 310.6
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 310.3
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 308.0
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 295.3
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 290.4
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 289.6
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 289.5
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 281.7
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 280.8
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 273.2
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 271.8
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 269.7
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 260.6
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 254.0
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 240.8
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 237.5
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 234.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 231.0
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 229.3
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 219.1
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 216.0
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 213.4
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 196.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 183.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 183.2
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 159.3
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 136.7
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Brain - Putamen (basal ganglia)
Average nTPM: 439.1
Samples: 205

Max nTPM: 999.2
Min nTPM: 248.1
Std nTPM: 89.1
Median nTPM: 418.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 999.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 763.5
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 759.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 734.1
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 713.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 653.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 641.6
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 624.5
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 612.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 607.6
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 595.8
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 590.9
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 571.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 567.0
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 561.7
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 558.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 557.6
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 548.5
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 547.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 542.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 536.3
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 531.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 525.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 521.6
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 520.9
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 520.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 517.9
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 513.7
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 503.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 502.8
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 501.4
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 499.4
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 497.9
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 495.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 495.4
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 494.8
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 490.5
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 489.5
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 488.8
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 487.0
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 486.8
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 486.1
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 483.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 480.9
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 477.8
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 476.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 476.2
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 475.6
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 473.0
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 471.5
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 470.5
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 470.5
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 470.3
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 469.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 468.6
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 467.7
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 466.8
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 466.7
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 462.5
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 460.9
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 460.3
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 459.7
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 456.9
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 456.2
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 454.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 454.2
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 453.8
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 453.3
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 451.9
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 451.7
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 450.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 450.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 448.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 448.7
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 446.7
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 446.7
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 446.2
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 445.7
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 442.0
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 441.2
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 441.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 439.1
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 437.8
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 437.6
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 437.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 435.0
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 434.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 434.1
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 431.8
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 431.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 430.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 430.4
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 429.2
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 428.9
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 427.5
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 426.6
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 425.9
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 423.9
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 423.4
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 423.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 421.6
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 420.5
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 418.9
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 418.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 418.6
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 418.5
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 418.4
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 417.2
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 417.1
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 417.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 417.0
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 416.2
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 415.9
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 415.7
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 415.1
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 414.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 414.2
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 413.8
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 412.5
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 411.5
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 410.7
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 410.6
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 409.9
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 409.5
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 409.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 408.7
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 408.5
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 406.3
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 405.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 405.5
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 404.4
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 404.3
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 403.9
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 403.9
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 403.8
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 403.5
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 403.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 402.8
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 401.0
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 400.8
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 399.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 399.4
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 399.2
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 399.1
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 397.9
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 397.7
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 397.2
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 396.9
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 396.8
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 396.3
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 395.4
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 395.3
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 393.8
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 393.2
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 389.1
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 386.9
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 386.7
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 386.5
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 385.5
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 385.4
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 384.3
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 382.9
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 382.2
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 381.5
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 380.1
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 379.5
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 377.7
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 377.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 374.7
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 374.6
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 374.0
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 373.8
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 373.7
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 372.2
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 371.6
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 370.0
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 365.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 365.6
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 363.2
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 362.7
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 362.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 357.5
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 355.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 355.4
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 354.3
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 352.4
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 349.8
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 347.8
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 337.2
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 334.9
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 334.7
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 333.7
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 330.0
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 329.4
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 328.2
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 326.7
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 323.9
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 320.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 318.1
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 317.6
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 314.2
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 302.2
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 300.8
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 278.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 248.1
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BASAL GANGLIA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1093.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 925.1
FF:10164-103B2 76 years, female 925.1
Nucleus accumbens
Scaled Tags Per Million: 874.0
FF:10037-101F1 23-56 years, mixed 874.0
Putamen
Scaled Tags Per Million: 1093.2
FF:10176-103C5 60 years, female 1093.2
Globus pallidus
Scaled Tags Per Million: 887.2
FF:10175-103C4 60 years, female 988.8
FF:10161-103A8 76 years, female 785.5

BASAL GANGLIA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1200.5
Pig sample Sample description nTPM
Caudate
nTPM: 1022.8
Samples: 4

Max nTPM: 1180.6
Min nTPM: 910.3
Sample A Female 1013.4
Sample B Female 986.8
Sample C Male 1180.6
Sample D Male 910.3
Putamen
nTPM: 1200.5
Samples: 4

Max nTPM: 1549.7
Min nTPM: 988.9
Sample A Female 1116.2
Sample B Female 988.9
Sample C Male 1549.7
Sample D Male 1147.3
Septum
nTPM: 1070.3
Samples: 4

Max nTPM: 1171.4
Min nTPM: 983.2
Sample A Female 1171.4
Sample B Female 983.2
Sample C Male 1017.7
Sample D Male 1108.7
Ventral pallidum
nTPM: 1047.2
Samples: 4

Max nTPM: 1129.4
Min nTPM: 975.6
Sample A Female 1062.9
Sample B Female 1129.4
Sample C Male 975.6
Sample D Male 1020.8

BASAL GANGLIA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

722.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 647.1
Samples: 4

Max nTPM: 685.3
Min nTPM: 624.6
Sample A Male 626.5
Sample B Male 624.6
Sample C Female 652.1
Sample D Female 685.3
Septum
nTPM: 722.0
Samples: 4

Max nTPM: 767.8
Min nTPM: 680.8
Sample A Male 680.8
Sample B Male 767.8
Sample C Female 721.6
Sample D Female 717.6
Ventral forebrain
nTPM: 652.5
Samples: 4

Max nTPM: 702.1
Min nTPM: 628.1
Sample A Male 628.1
Sample B Male 631.8
Sample C Female 702.1
Sample D Female 647.8

BASAL GANGLIA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.7
2739 Antisense, RP_Baylor_103126, Mouse strain C57BL/6J (56 days, male) 6.7
2740 Antisense, RP_Baylor_103126, Mouse strain C57BL/6J (56 days, male) 3.3
Pallidum
Expression energy: 6.5
2739 Antisense, RP_Baylor_103126, Mouse strain C57BL/6J (56 days, male) 6.5
2740 Antisense, RP_Baylor_103126, Mouse strain C57BL/6J (56 days, male) 2.7

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