MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:527.1 nTPM
HPA Brain:282.4 nTPM
GTEx:527.1 nTPM
FANTOM5:674.0 Scaled Tags Per Million
Pig:1236.5 nTPM
Mouse:566.6 nTPM
Allen mouse:7.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 282.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 248.5
2666 Male, age 74, left hemisphere 272.8
1870 Female, age 42, unknown 272.4
1827 Male, age 72, unknown 269.7
2411 Female, age 72, unknown 260.2
1833 Male, age 53, unknown 258.6
2828 Female, age 72, unknown 256.9
2019 Male, age 18, unknown 250.0
1830 Male, age 51, unknown 248.5
2219 Male, age 76, both hemispheres 215.6
2586 Male, age 75, left hemisphere 180.3
Dorsal raphe nucleus
nTPM: 278.5
2298 Female, age 72, unknown 341.2
2750 Male, age 76, both hemispheres 271.3
1828 Male, age 53, unknown 269.1
2016 Female, age 72, unknown 264.7
2047 Male, age 72, unknown 246.4
Inferior colliculus
nTPM: 259.2
2097 Female, age 72, unknown 283.3
2849 Male, age 72, unknown 260.6
1848 Female, age 42, unknown 250.2
1890 Male, age 53, unknown 242.6
Median raphe nucleus
nTPM: 263.5
2220 Male, age 76, midline 263.5
Periaquaductal grey, anterior
nTPM: 248.7
1795 Male, age 51, unknown 259.4
1947 Male, age 18, unknown 243.9
2502 Female, age 75, unknown 242.9
Periaquaductal grey, dorsal
nTPM: 263.1
2850 Male, age 76, both hemispheres 313.4
1840 Male, age 53, unknown 260.0
1831 Male, age 72, unknown 252.3
2464 Female, age 72, unknown 226.6
Periaquaductal grey, lateral
nTPM: 242.8
2140 Male, age 76, both hemispheres 244.6
2053 Male, age 18, unknown 242.8
2272 Male, age 74, both hemispheres 241.0
Pretectal area
nTPM: 282.4
1817 Female, age 42, unknown 323.8
1815 Male, age 53, unknown 313.5
2224 Female, age 72, unknown 311.1
1816 Male, age 51, unknown 305.3
1944 Female, age 72, unknown 300.1
2273 Male, age 74, both hemispheres 294.6
2007 Male, age 72, unknown 289.2
2825 Male, age 18, unknown 268.3
2667 Female, age 75, unknown 236.5
2316 Male, age 76, right hemisphere 232.6
2407 Male, age 75, both hemispheres 231.2
Red nucleus
nTPM: 270.5
2725 Female, age 75, unknown 328.4
1821 Female, age 72, unknown 321.9
2503 Female, age 72, unknown 311.1
2823 Male, age 76, right hemisphere 275.1
1904 Male, age 53, unknown 262.3
2588 Male, age 74, left hemisphere 259.5
2785 Male, age 18, unknown 258.3
1954 Female, age 42, unknown 256.0
2227 Male, age 72, unknown 255.1
1865 Male, age 51, unknown 253.2
2769 Male, age 72, unknown 245.7
2584 Male, age 75, left hemisphere 219.1
Substantia nigra
nTPM: 275.5
2241 Male, age 72, unknown 319.3
1916 Female, age 42, unknown 301.0
1889 Female, age 72, unknown 295.6
2699 Male, age 18, unknown 290.5
1851 Male, age 51, unknown 279.6
1941 Male, age 53, unknown 279.4
2665 Male, age 74, both hemispheres 267.3
2590 Female, age 75, unknown 262.3
2409 Female, age 72, unknown 239.2
2583 Male, age 75, right hemisphere 220.8
Superior colliculus
nTPM: 263.2
2587 Male, age 74, left hemisphere 303.1
2668 Female, age 75, unknown 272.3
2261 Male, age 18, unknown 271.0
1913 Female, age 42, unknown 266.9
1995 Male, age 72, unknown 265.9
2087 Female, age 72, unknown 265.8
1796 Male, age 53, unknown 262.2
1839 Male, age 51, unknown 249.3
1895 Male, age 76, right hemisphere 239.3
2664 Male, age 75, both hemispheres 236.0
Ventral tegmental area
nTPM: 270.2
2223 Female, age 72, unknown 298.9
2218 Male, age 76, both hemispheres 287.4
1915 Female, age 42, unknown 275.7
1942 Male, age 51, unknown 258.1
2021 Male, age 53, unknown 255.2
2410 Female, age 72, unknown 246.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 527.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 527.1
Samples: 139

Max nTPM: 905.9
Min nTPM: 348.8
Std nTPM: 114.2
Median nTPM: 513.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 905.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 898.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 863.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 798.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 787.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 761.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 750.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 731.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 724.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 721.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 711.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 674.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 674.0
FF:10158-103A5 76 years, female 674.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1236.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1035.1
Samples: 4

Max nTPM: 1179.6
Min nTPM: 854.2
Sample A Female 1179.6
Sample B Female 854.2
Sample C Male 1075.9
Sample D Male 1030.8
Midbrain
nTPM: 1236.5
Samples: 4

Max nTPM: 1633.1
Min nTPM: 1057.4
Sample A Female 1633.1
Sample B Female 1099.2
Sample C Male 1156.4
Sample D Male 1057.4
Periaqueductal gray
nTPM: 1010.1
Samples: 3

Max nTPM: 1101.6
Min nTPM: 945.9
Sample B Female 982.7
Sample C Male 1101.6
Sample D Male 945.9
Superior colliculi
nTPM: 1092.0
Samples: 4

Max nTPM: 1267.4
Min nTPM: 808.7
Sample A Female 1267.4
Sample B Female 808.7
Sample C Male 1213.4
Sample D Male 1078.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 566.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 566.6
Samples: 4

Max nTPM: 573.6
Min nTPM: 555.0
Sample A Male 573.6
Sample B Male 571.9
Sample C Female 565.8
Sample D Female 555.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.4
2739 Antisense, RP_Baylor_103126, Mouse strain C57BL/6J (56 days, male) 7.4
2740 Antisense, RP_Baylor_103126, Mouse strain C57BL/6J (56 days, male) 4.5

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