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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:586.7 nTPM
HPA Brain:358.1 nTPM
GTEx:586.7 nTPM
FANTOM5:1052.7 Scaled Tags Per Million
Pig:1252.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

358.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 306.9
1981 Female, age 72, midline 406.0
2048 Male, age 55, midline 322.0
2816 Male, age 47, midline 280.4
2565 Male, age 75, midline 267.8
2194 Female, age 79, both hemispheres 258.1
Cervical spinal cord, dorsal horn
nTPM: 353.2
2173 Female, age 72, unknown 442.8
2296 Male, age 66, both hemispheres 426.9
2069 Male, age 47, both hemispheres 379.4
1877 Male, age 55, unknown 326.4
2297 Male, age 75, both hemispheres 275.5
2721 Male, age 90, both hemispheres 267.9
Cervical spinal cord, ventral horn
nTPM: 358.1
2098 Female, age 72, unknown 467.1
2480 Male, age 75, both hemispheres 408.5
2809 Male, age 90, both hemispheres 386.6
2295 Male, age 66, both hemispheres 372.1
2068 Male, age 55, unknown 279.8
2820 Female, age 79, both hemispheres 234.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

586.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 586.7
Samples: 159

Max nTPM: 1023.3
Min nTPM: 314.2
Std nTPM: 123.7
Median nTPM: 585.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1023.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 957.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 956.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 898.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 853.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 798.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 794.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 787.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 786.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 781.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 781.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 760.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 758.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 758.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 742.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 733.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 728.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 726.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 715.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 714.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 710.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 709.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 707.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 703.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 703.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 700.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 696.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 694.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 693.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 691.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 686.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 684.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 682.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 680.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 673.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 673.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 673.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 666.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 666.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 665.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 665.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 661.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 659.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 659.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 657.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 657.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 656.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 654.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 646.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 645.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 644.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 643.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 639.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 633.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 631.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 630.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 629.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 627.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 627.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 626.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 616.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 615.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 614.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 611.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 610.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 609.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 609.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 608.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 607.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 605.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 605.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 604.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 602.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 602.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 600.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 599.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 593.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 586.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 585.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 585.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 572.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 571.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 570.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 570.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 568.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 565.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 562.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 562.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 560.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 556.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 555.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 554.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 554.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 551.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 544.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 543.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 541.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 540.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 537.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 535.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 533.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 530.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 521.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 521.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 520.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 520.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 519.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 518.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 516.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 515.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 515.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 515.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 513.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 513.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 511.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 505.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 501.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 500.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 497.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 493.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 493.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 490.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 490.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 489.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 488.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 487.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 486.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 483.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 478.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 476.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 475.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 472.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 470.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 469.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 465.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 465.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 456.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 456.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 451.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 442.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 433.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 430.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 429.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 429.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 425.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 425.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 424.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 411.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 403.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 400.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 399.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 398.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 398.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 391.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 390.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 377.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 376.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 344.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 314.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1052.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1052.7
FF:10181-103D1 60 years, female 1319.1
FF:10159-103A6 76 years, female 786.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1252.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1119.2
Samples: 4

Max nTPM: 1151.0
Min nTPM: 1091.9
Sample A Female 1118.1
Sample B Female 1151.0
Sample C Male 1091.9
Sample D Male 1115.6
Ventral spinal cord
nTPM: 1252.2
Samples: 4

Max nTPM: 1384.3
Min nTPM: 1185.0
Sample A Female 1242.4
Sample B Female 1197.2
Sample C Male 1185.0
Sample D Male 1384.3

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