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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:426.4 nTPM
FANTOM5:925.1 Scaled Tags Per Million
Pig:1022.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA008445Antibody CAB016200Antibody CAB021109Antibody CAB047350
Glial cells MediumMediumMediumNot detected
Neuronal cells HighHighMediumLow









CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

426.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 426.4
Samples: 246

Max nTPM: 909.6
Min nTPM: 258.4
Std nTPM: 84.1
Median nTPM: 413.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 909.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 809.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 788.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 749.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 727.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 726.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 660.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 595.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 584.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 575.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 559.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 555.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 553.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 551.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 545.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 542.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 536.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 534.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 523.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 522.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 522.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 517.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 515.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 511.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 507.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 506.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 500.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 499.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 499.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 494.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 493.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 490.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 489.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 488.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 487.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 485.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 485.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 485.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 484.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 482.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 480.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 477.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 477.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 475.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 474.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 472.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 470.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 470.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 468.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 467.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 465.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 464.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 464.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 462.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 462.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 461.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 461.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 461.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 460.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 460.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 460.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 459.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 458.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 455.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 454.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 453.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 453.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 452.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 452.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 452.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 452.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 450.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 450.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 449.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 448.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 448.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 447.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 447.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 446.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 446.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 442.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 441.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 440.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 440.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 440.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 439.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 439.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 437.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 437.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 436.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 434.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 434.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 433.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 433.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 433.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 432.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 432.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 432.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 429.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 428.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 427.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 425.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 425.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 425.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 425.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 425.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 424.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 424.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 424.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 422.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 422.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 420.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 419.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 417.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 417.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 417.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 416.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 416.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 416.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 415.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 415.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 414.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 413.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 412.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 412.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 411.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 411.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 410.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 410.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 410.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 410.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 409.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 409.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 409.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 408.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 408.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 407.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 406.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 405.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 405.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 404.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 404.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 404.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 403.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 403.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 403.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 401.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 401.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 401.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 400.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 400.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 400.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 399.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 399.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 398.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 398.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 398.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 398.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 397.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 397.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 396.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 396.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 395.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 395.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 394.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 392.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 391.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 390.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 390.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 389.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 389.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 389.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 388.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 388.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 386.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 386.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 385.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 385.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 383.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 383.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 381.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 380.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 380.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 377.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 377.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 377.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 374.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 374.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 372.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 372.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 371.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 371.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 371.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 370.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 370.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 369.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 368.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 368.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 366.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 366.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 363.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 363.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 363.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 362.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 361.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 360.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 360.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 359.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 357.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 357.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 356.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 356.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 355.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 353.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 352.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 352.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 351.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 350.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 350.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 349.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 347.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 346.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 344.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 342.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 341.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 341.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 340.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 332.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 329.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 329.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 329.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 322.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 321.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 321.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 314.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 314.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 308.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 307.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 299.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 296.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 295.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 292.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 289.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 285.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 279.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 258.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

925.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 925.1
FF:10164-103B2 76 years, female 925.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1022.8
Pig sample Sample description nTPM
Caudate
nTPM: 1022.8
Samples: 4

Max nTPM: 1180.6
Min nTPM: 910.3
Sample A Female 1013.4
Sample B Female 986.8
Sample C Male 1180.6
Sample D Male 910.3

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