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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:215.5 nTPM
FANTOM5:169.8 Scaled Tags Per Million
Pig:151.6 nTPM

MEDULLA OBLONGATA - Annotated protein expression
Pending normal tissue analysis

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

215.5
Sample id Sample description nTPM
Area postrema
nTPM: 144.8
2306 Male, age 80, both hemispheres 163.0
2054 Male, age 76, both hemispheres 144.7
2799 Male, age 61, both hemispheres 126.7
Dorsal medullary reticular nucleus
nTPM: 190.3
2088 Male, age 76, both hemispheres 195.4
2040 Female, age 85, both hemispheres 190.3
2373 Male, age 61, both hemispheres 185.2
Dorsal motor vagal complex
nTPM: 199.6
2844 Male, age 55, unknown 255.5
2133 Female, age 91, both hemispheres 206.9
2813 Female, age 72, unknown 205.6
2643 Male, age 74, both hemispheres 205.4
2000 Male, age 74, unknown 190.2
2185 Male, age 76, both hemispheres 184.0
2797 Male, age 61, both hemispheres 177.6
2807 Female, age 85, both hemispheres 171.4
Gigantocellular reticular nuclei, medullary
nTPM: 187.0
2462 Male, age 74, both hemispheres 229.0
2310 Male, age 80, both hemispheres 211.0
2022 Male, age 76, right hemisphere 179.8
2314 Male, age 61, both hemispheres 176.9
2387 Female, age 91, both hemispheres 168.7
1876 Female, age 85, both hemispheres 156.5
Gigantocellular reticular nuclei, pars
nTPM: 203.0
2168 Male, age 76, both hemispheres 224.3
2084 Female, age 85, both hemispheres 213.5
2336 Male, age 61, both hemispheres 207.0
2330 Male, age 80, both hemispheres 198.2
2706 Male, age 80, both hemispheres 172.2
Inferior olive
nTPM: 180.3
2628 Female, age 91, both hemispheres 201.2
2085 Female, age 85, both hemispheres 193.5
2563 Male, age 74, both hemispheres 182.9
2379 Male, age 80, both hemispheres 170.2
2178 Male, age 61, both hemispheres 153.8
Lateral medullary reticular nucleus
nTPM: 175.3
2804 Female, age 91, both hemispheres 202.7
2374 Male, age 61, both hemispheres 193.8
2190 Female, age 85, both hemispheres 180.1
2044 Male, age 76, both hemispheres 165.5
2305 Male, age 74, both hemispheres 156.8
2852 Male, age 80, both hemispheres 152.7
Medial olivary nucleus
nTPM: 126.8
2851 Male, age 80, both hemispheres 153.6
2138 Female, age 91, both hemispheres 138.0
1962 Male, age 76, both hemispheres 122.7
1943 Male, age 61, both hemispheres 92.9
Medial vestibular nucleus
nTPM: 177.7
2624 Male, age 61, both hemispheres 205.4
2134 Male, age 76, both hemispheres 182.5
2093 Male, age 80, both hemispheres 173.0
2801 Male, age 74, both hemispheres 168.9
2803 Female, age 91, both hemispheres 168.8
2743 Female, age 85, both hemispheres 167.7
Motor hypoglossal nucleus
nTPM: 201.8
2461 Male, age 61, both hemispheres 223.1
2182 Male, age 80, both hemispheres 204.9
2132 Female, age 85, both hemispheres 196.1
2277 Male, age 76, both hemispheres 194.6
2125 Female, age 91, both hemispheres 190.1
Nucleus ambiguus
nTPM: 215.5
2096 Female, age 85, both hemispheres 291.4
2071 Male, age 76, both hemispheres 139.6
Nucleus cuneatus
nTPM: 177.1
2131 Male, age 76, both hemispheres 207.3
2562 Male, age 61, both hemispheres 197.1
2805 Female, age 91, both hemispheres 196.0
2564 Male, age 74, both hemispheres 195.4
2100 Male, age 76, both hemispheres 190.4
2381 Male, age 80, both hemispheres 177.2
2380 Male, age 80, both hemispheres 147.7
2376 Male, age 61, both hemispheres 142.4
2808 Female, age 85, both hemispheres 140.6
Nucleus gracilis
nTPM: 162.8
2627 Male, age 74, both hemispheres 175.6
2299 Female, age 85, both hemispheres 163.0
2382 Male, age 80, both hemispheres 149.6
Nucleus raphe obscurus
nTPM: 144.3
2845 Female, age 85, midline 165.9
2800 Male, age 61, midline 150.5
2142 Male, age 76, midline 116.4
Nucleus raphe pallidus
nTPM: 137.6
2183 Male, age 80, midline 174.2
2145 Male, age 76, midline 147.5
1924 Male, age 61, midline 91.3
Nucleus tractus solitarii
nTPM: 165.8
2307 Male, age 80, both hemispheres 210.2
2656 Male, age 76, both hemispheres 206.0
2191 Female, age 85, both hemispheres 160.4
2144 Female, age 91, right hemisphere 86.7
Parvicellular reticular nuclei
nTPM: 177.9
2558 Male, age 74, both hemispheres 218.5
2119 Male, age 80, both hemispheres 158.9
2095 Male, age 76, both hemispheres 156.4
Parvicellular reticular nuclei, medullary
nTPM: 209.6
2181 Male, age 80, left hemisphere 222.1
2189 Female, age 91, both hemispheres 203.4
2091 Female, age 85, both hemispheres 203.2
Peritrigeminal nucleus
nTPM: 168.9
2067 Female, age 85, both hemispheres 190.0
2179 Male, age 61, both hemispheres 162.1
2136 Male, age 76, both hemispheres 154.5
Prepositus hypoglossal nucleus
nTPM: 152.9
2086 Male, age 80, both hemispheres 152.9
2855 Female, age 85, right hemisphere 152.9
Spinal trigeminal nucleus, caudal
nTPM: 205.7
2390 Female, age 91, both hemispheres 225.2
2308 Male, age 80, both hemispheres 215.3
2642 Male, age 74, both hemispheres 207.9
2447 Male, age 76, both hemispheres 207.0
2312 Male, age 61, both hemispheres 173.1
Spinal trigeminal nucleus, interpolar
nTPM: 192.2
2625 Male, age 61, both hemispheres 241.8
2066 Male, age 76, right hemisphere 186.6
2386 Female, age 85, both hemispheres 179.9
2389 Female, age 91, both hemispheres 179.2
2033 Male, age 80, both hemispheres 173.3
Spinal vestibular nucleus
nTPM: 178.4
2186 Female, age 91, both hemispheres 199.5
2780 Male, age 80, both hemispheres 180.0
2748 Male, age 76, both hemispheres 177.9
2384 Male, age 74, both hemispheres 175.9
2796 Male, age 61, both hemispheres 175.3
2806 Female, age 85, both hemispheres 161.9
Superior vestibular nucleus
nTPM: 143.1
2061 Male, age 76, both hemispheres 162.0
2015 Male, age 80, both hemispheres 161.3
2383 Male, age 74, both hemispheres 106.1
Ventral medullary reticular nucleus
nTPM: 188.5
2060 Male, age 76, both hemispheres 212.2
2372 Male, age 61, both hemispheres 164.8
Ventrolateral medulla, A1-C1 cell groups
nTPM: 178.9
2302 Female, age 91, both hemispheres 209.5
2741 Female, age 85, both hemispheres 199.2
2180 Male, age 61, both hemispheres 177.4
1986 Male, age 76, both hemispheres 160.7
2118 Male, age 80, both hemispheres 147.9

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

169.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 169.8
FF:10038-101F2 18-64 years, mixed 205.2
FF:10155-103A2 76 years, female 170.7
FF:10174-103C3 60 years, female 133.6

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.6
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 151.6
Samples: 4

Max nTPM: 178.3
Min nTPM: 129.0
Sample A Female 161.5
Sample B Female 129.0
Sample C Male 178.3
Sample D Male 137.6

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