MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.4 nTPM
HPA Brain:226.3 nTPM
GTEx:43.4 nTPM
FANTOM5:74.3 Scaled Tags Per Million
Pig:170.6 nTPM
Mouse:30.5 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 226.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 205.7
2219 Male, age 76, both hemispheres 310.6
2586 Male, age 75, left hemisphere 304.7
2828 Female, age 72, unknown 208.5
1827 Male, age 72, unknown 194.7
2019 Male, age 18, unknown 193.3
2411 Female, age 72, unknown 182.4
1833 Male, age 53, unknown 170.4
2666 Male, age 74, left hemisphere 169.7
1870 Female, age 42, unknown 168.9
1830 Male, age 51, unknown 154.0
Dorsal raphe nucleus
nTPM: 174.2
2750 Male, age 76, both hemispheres 200.7
2047 Male, age 72, unknown 188.3
2298 Female, age 72, unknown 177.4
1828 Male, age 53, unknown 166.4
2016 Female, age 72, unknown 138.4
Inferior colliculus
nTPM: 176.1
2097 Female, age 72, unknown 182.4
2849 Male, age 72, unknown 181.0
1848 Female, age 42, unknown 174.6
1890 Male, age 53, unknown 166.3
Median raphe nucleus
nTPM: 226.3
2220 Male, age 76, midline 226.3
Periaquaductal grey, anterior
nTPM: 214.9
1795 Male, age 51, unknown 238.2
2502 Female, age 75, unknown 237.4
1947 Male, age 18, unknown 169.1
Periaquaductal grey, dorsal
nTPM: 170.8
1831 Male, age 72, unknown 183.1
2464 Female, age 72, unknown 176.8
1840 Male, age 53, unknown 176.3
2850 Male, age 76, both hemispheres 147.0
Periaquaductal grey, lateral
nTPM: 150.3
2053 Male, age 18, unknown 164.2
2140 Male, age 76, both hemispheres 145.4
2272 Male, age 74, both hemispheres 141.3
Pretectal area
nTPM: 223.6
1816 Male, age 51, unknown 323.4
2007 Male, age 72, unknown 288.8
1944 Female, age 72, unknown 266.5
1817 Female, age 42, unknown 266.4
1815 Male, age 53, unknown 258.2
2667 Female, age 75, unknown 205.7
2407 Male, age 75, both hemispheres 196.1
2224 Female, age 72, unknown 190.7
2825 Male, age 18, unknown 176.7
2316 Male, age 76, right hemisphere 153.3
2273 Male, age 74, both hemispheres 134.3
Red nucleus
nTPM: 157.8
2785 Male, age 18, unknown 206.1
2584 Male, age 75, left hemisphere 204.7
2588 Male, age 74, left hemisphere 184.7
2725 Female, age 75, unknown 163.3
2503 Female, age 72, unknown 161.4
2769 Male, age 72, unknown 149.8
2227 Male, age 72, unknown 144.6
1904 Male, age 53, unknown 144.4
1954 Female, age 42, unknown 142.2
1865 Male, age 51, unknown 134.0
2823 Male, age 76, right hemisphere 131.6
1821 Female, age 72, unknown 126.6
Substantia nigra
nTPM: 173.1
2665 Male, age 74, both hemispheres 220.4
1889 Female, age 72, unknown 216.1
1916 Female, age 42, unknown 189.0
1941 Male, age 53, unknown 186.8
2583 Male, age 75, right hemisphere 175.6
1851 Male, age 51, unknown 172.0
2699 Male, age 18, unknown 155.3
2590 Female, age 75, unknown 147.7
2241 Male, age 72, unknown 134.9
2409 Female, age 72, unknown 133.3
Superior colliculus
nTPM: 209.0
2664 Male, age 75, both hemispheres 268.0
2261 Male, age 18, unknown 248.6
2087 Female, age 72, unknown 241.9
1796 Male, age 53, unknown 226.9
2668 Female, age 75, unknown 213.6
1913 Female, age 42, unknown 187.3
1995 Male, age 72, unknown 186.2
1839 Male, age 51, unknown 180.6
1895 Male, age 76, right hemisphere 171.2
2587 Male, age 74, left hemisphere 165.6
Ventral tegmental area
nTPM: 188.6
2218 Male, age 76, both hemispheres 217.3
1942 Male, age 51, unknown 191.3
2223 Female, age 72, unknown 191.2
2410 Female, age 72, unknown 186.0
2021 Male, age 53, unknown 175.5
1915 Female, age 42, unknown 170.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 43.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.4
Samples: 139

Max nTPM: 71.8
Min nTPM: 14.3
Std nTPM: 13.6
Median nTPM: 43.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 71.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 70.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 70.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 68.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 67.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 67.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 67.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 67.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 65.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 63.9
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 62.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 74.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 74.3
FF:10158-103A5 76 years, female 74.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 170.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 151.9
Samples: 4

Max nTPM: 184.9
Min nTPM: 96.2
Sample A Female 163.1
Sample B Female 96.2
Sample C Male 163.4
Sample D Male 184.9
Midbrain
nTPM: 170.6
Samples: 4

Max nTPM: 220.3
Min nTPM: 108.1
Sample A Female 220.3
Sample B Female 108.1
Sample C Male 201.9
Sample D Male 152.1
Periaqueductal gray
nTPM: 108.4
Samples: 3

Max nTPM: 126.0
Min nTPM: 88.8
Sample B Female 110.5
Sample C Male 126.0
Sample D Male 88.8
Superior colliculi
nTPM: 126.1
Samples: 4

Max nTPM: 150.7
Min nTPM: 66.2
Sample A Female 144.4
Sample B Female 66.2
Sample C Male 143.1
Sample D Male 150.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 30.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.5
Samples: 4

Max nTPM: 32.8
Min nTPM: 28.0
Sample A Male 32.8
Sample B Male 28.0
Sample C Female 28.5
Sample D Female 32.5

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