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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:254.5 nTPM
FANTOM5:165.1 Scaled Tags Per Million
Pig:169.4 nTPM
Mouse:34.5 nTPM

THALAMUS - Annotated protein expression
Pending normal tissue analysis

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

254.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 174.4
2032 Female, age 42, unknown 233.0
2497 Male, age 66, unknown 202.8
2396 Male, age 61, right hemisphere 87.4
Centromedial thalamic nucleus
nTPM: 192.1
2401 Male, age 76, right hemisphere 240.8
2279 Female, age 85, left hemisphere 143.4
Habenula
nTPM: 254.5
2203 Male, age 61, left hemisphere 282.9
2276 Male, age 66, unknown 276.3
1957 Male, age 80, both hemispheres 255.7
2252 Male, age 62, unknown 203.0
Lateral geniculate body
nTPM: 205.1
2399 Male, age 61, left hemisphere 269.9
2857 Male, age 74, right hemisphere 255.4
2106 Female, age 67, right hemisphere 238.1
2035 Female, age 72, unknown 221.5
1953 Male, age 62, unknown 202.8
2659 Male, age 66, unknown 187.2
2841 Male, age 80, both hemispheres 156.0
2575 Female, age 94, right hemisphere 110.0
Lateral thalamic nuclei
nTPM: 206.9
1903 Male, age 76, left hemisphere 262.6
2661 Female, age 72, unknown 260.2
2577 Male, age 74, both hemispheres 194.6
2573 Female, age 94, left hemisphere 158.6
2765 Female, age 67, both hemispheres 158.3
Medial dorsal thalamic nucleus
nTPM: 240.7
2283 Male, age 80, right hemisphere 305.7
1810 Male, age 48, unknown 290.4
2498 Male, age 66, unknown 283.9
1859 Male, age 76, both hemispheres 278.4
2492 Male, age 75, right hemisphere 271.9
2026 Male, age 62, unknown 249.4
2576 Male, age 74, both hemispheres 239.3
2660 Female, age 72, unknown 235.0
2402 Female, age 67, both hemispheres 229.8
1971 Male, age 61, right hemisphere 216.3
1930 Female, age 42, unknown 201.6
2039 Female, age 72, unknown 200.4
2572 Female, age 94, right hemisphere 127.4
Medial geniculate body
nTPM: 237.7
1811 Female, age 42, unknown 304.2
2571 Male, age 75, right hemisphere 284.1
2207 Male, age 80, right hemisphere 271.3
2657 Male, age 74, right hemisphere 234.5
2217 Female, age 72, unknown 224.5
2650 Female, age 94, left hemisphere 178.1
2049 Male, age 76, both hemispheres 167.0
Nucleus reuniens
nTPM: 180.0
2212 Female, age 67, left hemisphere 208.0
2205 Male, age 80, left hemisphere 194.2
2210 Female, age 85, left hemisphere 137.7
Nucleus rhomboideus
nTPM: 201.3
2206 Male, age 80, both hemispheres 309.9
2280 Female, age 85, left hemisphere 154.6
2213 Female, age 67, left hemisphere 139.4
Posterior thalamic nucleus
nTPM: 223.7
2655 Male, age 74, right hemisphere 272.1
2266 Male, age 76, right hemisphere 258.6
2495 Female, age 67, right hemisphere 248.9
2649 Female, age 94, both hemispheres 115.3
Pulvinar
nTPM: 248.8
2582 Female, age 72, unknown 323.7
2398 Male, age 61, left hemisphere 264.6
2496 Female, age 67, right hemisphere 256.2
2724 Male, age 74, right hemisphere 253.4
2214 Male, age 76, right hemisphere 250.2
1932 Male, age 80, right hemisphere 239.7
1929 Male, age 48, unknown 237.6
2499 Male, age 66, unknown 225.0
1972 Male, age 62, unknown 220.1
1899 Female, age 42, unknown 217.3
Subthalamic nucleus
nTPM: 183.3
2406 Female, age 72, unknown 255.9
2779 Female, age 42, unknown 196.2
2275 Male, age 66, unknown 183.7
2124 Male, age 62, unknown 178.6
2658 Male, age 74, both hemispheres 170.5
2282 Male, age 61, both hemispheres 166.1
2056 Female, age 72, unknown 158.6
2216 Male, age 48, unknown 156.9
Ventral posterolateral thalamic nucleus
nTPM: 242.1
2197 Male, age 80, both hemispheres 276.5
2581 Female, age 72, unknown 270.4
2740 Male, age 76, right hemisphere 262.0
2570 Male, age 75, right hemisphere 232.1
2397 Male, age 61, right hemisphere 212.6
2578 Male, age 74, both hemispheres 198.6
Ventral posteromedial thalamic nucleus
nTPM: 249.9
2758 Male, age 80, both hemispheres 327.4
2202 Male, age 61, left hemisphere 293.3
2281 Male, age 75, right hemisphere 228.2
2653 Male, age 74, both hemispheres 202.6
2127 Male, age 76, right hemisphere 198.2
Ventral thalamic nuclei
nTPM: 218.2
2858 Female, age 72, unknown 257.1
2285 Male, age 62, unknown 241.5
1912 Female, age 42, unknown 236.2
1860 Male, age 76, both hemispheres 236.1
2204 Male, age 80, both hemispheres 229.6
1845 Male, age 48, unknown 210.9
2580 Male, age 66, unknown 186.0
2291 Female, age 72, unknown 184.6
2652 Male, age 74, left hemisphere 181.8
Zona incerta
nTPM: 186.2
2208 Male, age 80, right hemisphere 274.1
2663 Female, age 72, unknown 219.2
2403 Male, age 62, unknown 165.9
2822 Male, age 74, right hemisphere 144.1
2215 Male, age 66, unknown 128.1

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

165.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 165.1
FF:10154-103A1 76 years, female 165.1

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

169.4
Pig sample Sample description nTPM
Thalamus
nTPM: 169.4
Samples: 4

Max nTPM: 197.6
Min nTPM: 150.5
Sample A Female 197.6
Sample B Female 159.6
Sample C Male 150.5
Sample D Male 169.8

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.5
Mouse sample Sample description nTPM
Thalamus
nTPM: 34.5
Samples: 4

Max nTPM: 45.6
Min nTPM: 29.0
Sample A Male 45.6
Sample B Male 29.0
Sample C Female 31.7
Sample D Female 31.6

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