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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1542.4 nTPM
HPA Brain:586.6 nTPM
GTEx:1542.4 nTPM
FANTOM5:559.0 Scaled Tags Per Million
Pig:590.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

586.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 429.4
2565 Male, age 75, midline 564.5
1981 Female, age 72, midline 512.3
2048 Male, age 55, midline 379.9
2816 Male, age 47, midline 362.8
2194 Female, age 79, both hemispheres 327.8
Cervical spinal cord, dorsal horn
nTPM: 438.5
2173 Female, age 72, unknown 624.8
2069 Male, age 47, both hemispheres 521.0
2296 Male, age 66, both hemispheres 487.3
1877 Male, age 55, unknown 464.1
2297 Male, age 75, both hemispheres 289.5
2721 Male, age 90, both hemispheres 244.1
Cervical spinal cord, ventral horn
nTPM: 586.6
2480 Male, age 75, both hemispheres 887.0
2809 Male, age 90, both hemispheres 743.8
2098 Female, age 72, unknown 704.2
2068 Male, age 55, unknown 468.1
2295 Male, age 66, both hemispheres 455.9
2820 Female, age 79, both hemispheres 260.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1542.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1542.4
Samples: 159

Max nTPM: 3337.4
Min nTPM: 438.6
Std nTPM: 572.8
Median nTPM: 1416.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 3337.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 3087.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 3024.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 3017.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2827.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2801.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2790.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2775.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2682.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2661.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 2540.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 2488.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2464.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2449.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2446.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2432.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2397.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2381.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 2371.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 2358.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 2332.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2310.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 2270.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 2211.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2196.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 2151.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 2141.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 2117.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 2114.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 2075.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2030.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1969.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1944.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1930.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1914.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1906.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1896.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1885.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1879.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1805.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1774.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1769.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1768.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1764.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1755.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1750.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1692.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1692.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1690.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1669.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1668.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1658.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1651.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1643.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1619.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1619.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1615.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1614.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1604.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1600.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1599.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1577.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1559.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1530.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1525.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1516.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1514.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1505.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1499.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1498.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1488.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1481.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1477.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1469.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1469.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1467.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1467.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1461.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1426.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1416.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1412.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1408.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1396.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1392.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1390.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1386.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1380.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1380.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1376.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1365.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1363.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1359.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1358.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1358.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1352.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1351.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1335.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1321.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1316.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1299.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1294.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1294.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1253.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1240.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1228.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1221.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1214.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1204.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1203.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1194.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1187.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1183.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1176.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1171.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1169.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1160.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1145.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1140.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1137.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1121.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1118.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1103.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1101.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1088.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1086.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1072.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1064.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1051.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1046.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1046.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1039.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1030.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1028.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1024.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1015.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1003.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 996.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 995.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 972.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 971.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 958.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 956.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 924.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 920.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 914.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 894.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 877.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 874.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 873.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 849.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 826.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 823.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 814.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 794.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 733.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 579.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 575.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 504.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 438.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

559.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 559.0
FF:10181-103D1 60 years, female 714.4
FF:10159-103A6 76 years, female 403.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

590.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 590.1
Samples: 4

Max nTPM: 905.2
Min nTPM: 417.6
Sample A Female 417.6
Sample B Female 610.2
Sample C Male 905.2
Sample D Male 427.4
Ventral spinal cord
nTPM: 547.8
Samples: 4

Max nTPM: 611.1
Min nTPM: 431.4
Sample A Female 431.4
Sample B Female 605.8
Sample C Male 611.1
Sample D Male 542.9

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