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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:507.5 nTPM
FANTOM5:414.1 Scaled Tags Per Million
Pig:404.8 nTPM
Mouse:601.6 nTPM
Allen mouse:1.3 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

507.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 357.7
2396 Male, age 61, right hemisphere 456.1
2497 Male, age 66, unknown 337.3
2032 Female, age 42, unknown 279.6
Centromedial thalamic nucleus
nTPM: 272.3
2279 Female, age 85, left hemisphere 273.7
2401 Male, age 76, right hemisphere 270.9
Habenula
nTPM: 292.3
1957 Male, age 80, both hemispheres 350.2
2203 Male, age 61, left hemisphere 321.9
2252 Male, age 62, unknown 250.7
2276 Male, age 66, unknown 246.2
Lateral geniculate body
nTPM: 345.5
2575 Female, age 94, right hemisphere 448.5
2857 Male, age 74, right hemisphere 390.6
2399 Male, age 61, left hemisphere 359.4
2035 Female, age 72, unknown 335.7
2659 Male, age 66, unknown 324.7
2841 Male, age 80, both hemispheres 319.3
1953 Male, age 62, unknown 304.4
2106 Female, age 67, right hemisphere 281.8
Lateral thalamic nuclei
nTPM: 396.4
2661 Female, age 72, unknown 457.7
2573 Female, age 94, left hemisphere 435.9
2765 Female, age 67, both hemispheres 419.1
2577 Male, age 74, both hemispheres 396.8
1903 Male, age 76, left hemisphere 272.6
Medial dorsal thalamic nucleus
nTPM: 342.8
2572 Female, age 94, right hemisphere 627.1
1930 Female, age 42, unknown 366.5
2660 Female, age 72, unknown 361.9
2576 Male, age 74, both hemispheres 356.8
1810 Male, age 48, unknown 348.8
2402 Female, age 67, both hemispheres 333.4
1859 Male, age 76, both hemispheres 328.1
1971 Male, age 61, right hemisphere 323.5
2026 Male, age 62, unknown 312.5
2039 Female, age 72, unknown 302.6
2498 Male, age 66, unknown 294.5
2492 Male, age 75, right hemisphere 267.0
2283 Male, age 80, right hemisphere 234.0
Medial geniculate body
nTPM: 364.3
2571 Male, age 75, right hemisphere 478.8
2650 Female, age 94, left hemisphere 387.5
1811 Female, age 42, unknown 355.3
2049 Male, age 76, both hemispheres 354.3
2207 Male, age 80, right hemisphere 343.6
2657 Male, age 74, right hemisphere 325.2
2217 Female, age 72, unknown 305.6
Nucleus reuniens
nTPM: 374.1
2210 Female, age 85, left hemisphere 428.3
2205 Male, age 80, left hemisphere 372.5
2212 Female, age 67, left hemisphere 321.5
Nucleus rhomboideus
nTPM: 350.2
2280 Female, age 85, left hemisphere 365.1
2213 Female, age 67, left hemisphere 343.1
2206 Male, age 80, both hemispheres 342.3
Posterior thalamic nucleus
nTPM: 507.5
2649 Female, age 94, both hemispheres 971.2
2655 Male, age 74, right hemisphere 437.3
2266 Male, age 76, right hemisphere 317.6
2495 Female, age 67, right hemisphere 303.7
Pulvinar
nTPM: 327.3
2496 Female, age 67, right hemisphere 381.8
2499 Male, age 66, unknown 378.8
2398 Male, age 61, left hemisphere 348.4
1929 Male, age 48, unknown 339.5
1932 Male, age 80, right hemisphere 336.1
2214 Male, age 76, right hemisphere 324.6
2582 Female, age 72, unknown 320.2
1972 Male, age 62, unknown 300.1
2724 Male, age 74, right hemisphere 293.1
1899 Female, age 42, unknown 250.9
Subthalamic nucleus
nTPM: 328.6
2658 Male, age 74, both hemispheres 400.4
2056 Female, age 72, unknown 394.5
2124 Male, age 62, unknown 376.1
2275 Male, age 66, unknown 339.9
2216 Male, age 48, unknown 297.3
2282 Male, age 61, both hemispheres 296.9
2779 Female, age 42, unknown 290.8
2406 Female, age 72, unknown 232.7
Ventral posterolateral thalamic nucleus
nTPM: 331.6
2578 Male, age 74, both hemispheres 400.1
2397 Male, age 61, right hemisphere 373.7
2197 Male, age 80, both hemispheres 339.2
2570 Male, age 75, right hemisphere 311.1
2581 Female, age 72, unknown 282.9
2740 Male, age 76, right hemisphere 282.3
Ventral posteromedial thalamic nucleus
nTPM: 302.0
2653 Male, age 74, both hemispheres 353.5
2202 Male, age 61, left hemisphere 301.2
2758 Male, age 80, both hemispheres 290.2
2127 Male, age 76, right hemisphere 283.6
2281 Male, age 75, right hemisphere 281.7
Ventral thalamic nuclei
nTPM: 355.0
2580 Male, age 66, unknown 436.3
2291 Female, age 72, unknown 377.5
1860 Male, age 76, both hemispheres 371.5
1912 Female, age 42, unknown 364.9
1845 Male, age 48, unknown 352.3
2285 Male, age 62, unknown 341.6
2204 Male, age 80, both hemispheres 336.0
2652 Male, age 74, left hemisphere 313.0
2858 Female, age 72, unknown 301.6
Zona incerta
nTPM: 341.4
2822 Male, age 74, right hemisphere 424.6
2403 Male, age 62, unknown 373.0
2215 Male, age 66, unknown 331.8
2663 Female, age 72, unknown 302.2
2208 Male, age 80, right hemisphere 275.2

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

414.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 414.1
FF:10154-103A1 76 years, female 414.1

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

404.8
Pig sample Sample description nTPM
Thalamus
nTPM: 404.8
Samples: 4

Max nTPM: 481.2
Min nTPM: 288.8
Sample A Female 414.4
Sample B Female 288.8
Sample C Male 481.2
Sample D Male 434.7

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

601.6
Mouse sample Sample description nTPM
Thalamus
nTPM: 601.6
Samples: 4

Max nTPM: 747.3
Min nTPM: 516.3
Sample A Male 747.3
Sample B Male 524.6
Sample C Female 618.3
Sample D Female 516.3

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.3
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 1.3
631721 Antisense, RP_040907_01_B12, Mouse strain C57BL/6J (56 days, male) 1.5
70928395 Antisense, RP_050808_02_A04, Mouse strain C57BL/6J (56 days, male) 1.1

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