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RPL24
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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:809.8 nTPM
HPA Brain:271.2 nTPM
GTEx:809.8 nTPM
FANTOM5:90.5 Scaled Tags Per Million
Pig:347.5 nTPM

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051653
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

271.2
Sample id Sample description nTPM
Hippocampus
nTPM: 265.4
2529 Female, age 94, left hemisphere 307.2
1898 Male, age 80, left hemisphere 305.6
2621 Female, age 67, right hemisphere 276.2
1911 Female, age 85, right hemisphere 250.3
2148 Female, age 91, left hemisphere 227.2
1855 Male, age 76, left hemisphere 226.0
Dentate gyrus
nTPM: 253.5
2530 Female, age 94, left hemisphere 315.8
2246 Female, age 85, both hemispheres 260.0
1927 Female, age 91, both hemispheres 259.1
2010 Male, age 76, both hemispheres 246.9
2531 Female, age 67, both hemispheres 245.2
2528 Male, age 74, both hemispheres 194.2
Entorhinal gyrus
nTPM: 245.3
2686 Male, age 75, right hemisphere 301.5
1938 Female, age 85, left hemisphere 253.6
2764 Male, age 80, right hemisphere 247.9
1787 Male, age 76, left hemisphere 243.2
2117 Female, age 91, right hemisphere 232.0
2613 Female, age 94, left hemisphere 193.4
Hippocampus, CA1
nTPM: 240.5
1873 Female, age 85, both hemispheres 258.0
2045 Male, age 76, both hemispheres 242.3
2749 Male, age 80, left hemisphere 238.9
2082 Female, age 91, right hemisphere 232.1
2527 Male, age 74, both hemispheres 231.2
Hippocampus, CA2
nTPM: 254.4
1892 Male, age 76, both hemispheres 283.0
1963 Male, age 80, left hemisphere 280.3
2437 Female, age 94, left hemisphere 273.2
1940 Female, age 85, left hemisphere 241.0
2113 Female, age 91, right hemisphere 226.7
2249 Male, age 74, both hemispheres 222.2
Hippocampus, CA3
nTPM: 231.7
1867 Male, age 76, both hemispheres 280.5
1891 Female, age 85, both hemispheres 260.7
2861 Female, age 67, both hemispheres 222.3
2436 Male, age 74, both hemispheres 221.9
2137 Male, age 80, left hemisphere 220.9
2620 Female, age 94, left hemisphere 183.9
Parahippocampal cortex
nTPM: 240.3
2018 Male, age 76, both hemispheres 280.9
1850 Male, age 80, both hemispheres 270.6
2245 Female, age 91, both hemispheres 254.5
1933 Female, age 85, both hemispheres 253.6
1990 Female, age 91, right hemisphere 252.9
2250 Female, age 67, right hemisphere 247.7
2532 Female, age 72, left hemisphere 232.4
2692 Male, age 74, both hemispheres 221.8
2622 Female, age 67, right hemisphere 197.5
2693 Female, age 94, both hemispheres 191.3
Perirhinal gyrus
nTPM: 271.2
1841 Female, age 85, right hemisphere 317.5
1847 Female, age 91, left hemisphere 308.4
1794 Male, age 80, right hemisphere 273.6
2848 Male, age 76, right hemisphere 235.7
2521 Female, age 94, right hemisphere 220.9
Subiculum
nTPM: 265.6
2438 Female, age 94, left hemisphere 332.5
1977 Female, age 85, both hemispheres 283.3
2042 Male, age 76, both hemispheres 277.4
1901 Male, age 80, both hemispheres 265.1
2729 Female, age 91, right hemisphere 222.2
2619 Male, age 74, both hemispheres 213.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

809.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 809.8
Samples: 197

Max nTPM: 2885.7
Min nTPM: 397.8
Std nTPM: 285.5
Median nTPM: 745.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 2885.7
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 1954.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 1723.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 1652.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 1561.5
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 1480.4
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 1464.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1389.0
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 1368.8
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 1331.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 1269.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 1243.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 1235.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 1186.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 1158.4
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 1148.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 1134.4
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 1129.2
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 1105.3
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 1105.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 1085.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 1077.9
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 1066.1
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 1066.1
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 1065.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 1063.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 1060.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 1051.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 1051.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 1038.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 1035.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 1029.6
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 1024.4
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 1023.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 1013.0
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 1005.7
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 1004.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 1003.4
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 985.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 975.0
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 973.1
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 956.6
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 946.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 930.6
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 928.9
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 927.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 909.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 909.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 908.3
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 903.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 901.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 899.2
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 897.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 892.3
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 875.9
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 873.2
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 867.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 864.9
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 860.2
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 857.9
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 856.3
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 843.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 839.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 836.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 835.0
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 833.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 832.6
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 816.0
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 813.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 812.4
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 811.9
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 809.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 807.4
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 802.7
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 797.7
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 791.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 788.2
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 786.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 785.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 781.3
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 780.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 779.7
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 777.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 775.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 772.7
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 771.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 769.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 767.4
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 767.2
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 761.1
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 760.1
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 753.9
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 752.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 752.3
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 751.9
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 751.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 748.7
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 748.0
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 745.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 742.3
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 737.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 736.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 736.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 727.1
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 722.2
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 720.8
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 717.4
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 717.3
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 715.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 714.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 714.3
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 714.3
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 713.7
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 712.0
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 705.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 705.1
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 703.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 703.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 703.0
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 696.3
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 695.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 694.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 693.3
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 692.8
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 690.7
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 689.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 688.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 686.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 682.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 682.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 678.6
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 675.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 673.7
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 667.3
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 666.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 666.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 659.7
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 659.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 658.9
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 658.8
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 658.7
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 658.1
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 657.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 654.4
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 653.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 649.9
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 649.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 647.7
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 645.4
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 642.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 641.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 638.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 637.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 635.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 627.9
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 625.4
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 624.2
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 623.0
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 612.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 611.7
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 608.7
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 607.9
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 602.1
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 598.3
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 596.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 590.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 590.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 588.8
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 585.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 582.7
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 580.9
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 580.3
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 577.8
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 570.2
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 570.0
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 568.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 565.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 559.8
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 554.2
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 553.5
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 545.2
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 542.7
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 542.7
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 541.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 539.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 515.0
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 502.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 498.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 493.4
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 491.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 487.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 479.0
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 459.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 458.2
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 449.7
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 435.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 397.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

90.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 90.5
FF:10153-102I9 76 years, female 90.6
FF:10169-103B7 60 years, female 90.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

347.5
Pig sample Sample description nTPM
Subiculum
nTPM: 316.0
Samples: 4

Max nTPM: 445.5
Min nTPM: 258.9
Sample A Female 445.5
Sample B Female 298.9
Sample C Male 258.9
Sample D Male 260.7
Dorsal hippocampus
nTPM: 347.5
Samples: 4

Max nTPM: 422.7
Min nTPM: 276.8
Sample A Female 422.7
Sample B Female 320.5
Sample C Male 370.1
Sample D Male 276.8
Entorhinal cortex
nTPM: 333.4
Samples: 4

Max nTPM: 420.6
Min nTPM: 258.6
Sample A Female 293.3
Sample B Female 420.6
Sample C Male 361.2
Sample D Male 258.6
Ventral hippocampus
nTPM: 294.9
Samples: 4

Max nTPM: 318.0
Min nTPM: 269.8
Sample A Female 318.0
Sample B Female 269.8
Sample C Male 304.0
Sample D Male 287.9

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