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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:565.6 nTPM
GTEx:565.6 nTPM
FANTOM5:57.3 Scaled Tags Per Million
Pig:173.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

565.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 565.6
Samples: 105

Max nTPM: 771.3
Min nTPM: 405.6
Std nTPM: 79.8
Median nTPM:
379_1 60 years, male 771.3
246_1 77 years, male 736.8
153_1 70 years, female 723.0
321_1 62 years, female 721.6
384_1 83 years, male 721.1
452_1 88 years, female 704.9
237_1 82 years, male 701.5
389_1 86 years, female 697.0
120_1 70 years, female 695.8
35_1 74 years, female 693.7
447_1 81 years, male 693.3
307_1 66 years, female 688.5
2_1 77 years, female 685.2
218_1 71 years, female 663.3
17_1 71 years, male 661.6
139_1 64 years, female 653.1
491_1 89 years, female 650.2
375_1 74 years, female 646.1
4_1 88 years, female 642.8
396_1 62 years, male 642.6
377_1 82 years, female 634.3
265_1 87 years, male 633.7
495_1 57 years, female 632.9
386_1 76 years, male 632.1
376_1 75 years, female 630.4
189_1 76 years, male 624.9
322_1 76 years, male 621.5
315_1 62 years, female 620.9
145_1 84 years, male 604.8
126_1 63 years, male 603.6
229_1 69 years, female 602.8
254_1 77 years, female 599.3
308_1 70 years, female 599.2
404_1 82 years, female 595.0
162_1 79 years, female 592.6
311_1 78 years, male 590.1
348_1 84 years, male 588.4
414_1 84 years, female 587.5
41_1 94 years, female 587.1
394_1 75 years, female 586.4
413_1 59 years, female 582.4
347_1 72 years, male 581.4
137_1 83 years, male 581.2
355_1 70 years, female 581.2
173_1 67 years, male 580.6
466_1 57 years, female 572.5
518_1 75 years, female 569.5
526_1 61 years, male 565.4
266_1 85 years, male 563.7
501_1 88 years, male 558.4
354_1 81 years, female 556.0
6_1 73 years, female 554.3
320_1 89 years, female 553.0
264_1 73 years, female 552.6
353_1 82 years, female 547.5
251_1 78 years, male 547.4
415_1 77 years, female 543.9
217_1 76 years, male 543.2
288_1 66 years, female 543.0
351_1 91 years, male 541.3
405_1 91 years, male 540.6
117_1 61 years, male 539.6
490_1 67 years, female 536.8
42_1 85 years, male 536.7
335_1 73 years, female 535.1
352_1 62 years, male 534.4
177_1 74 years, male 534.0
295_1 61 years, female 531.9
243_1 75 years, male 529.4
468_1 89 years, male 529.4
316_1 62 years, male 526.7
319_1 81 years, male 522.3
499_1 55 years, female 521.9
163_1 78 years, male 518.8
119_1 70 years, female 518.3
317_1 60 years, male 517.1
314_1 67 years, male 509.3
349_1 83 years, male 508.4
89_1 63 years, male 507.9
18_1 88 years, male 507.0
291_1 76 years, male 505.8
109_1 81 years, female 501.1
115_1 83 years, male 500.2
324_1 76 years, male 498.3
142_1 61 years, female 493.4
503_1 68 years, male 492.5
81_1 67 years, male 485.2
517_1 88 years, male 481.7
99_1 64 years, male 479.9
172_1 72 years, female 477.7
286_1 68 years, female 476.6
480_1 63 years, male 475.1
43_1 64 years, female 468.6
318_1 68 years, male 466.6
506_1 65 years, male 465.8
425_1 59 years, female 463.1
356_1 87 years, female 462.6
313_1 79 years, female 462.1
406_1 79 years, male 460.9
32_1 67 years, male 456.3
293_1 68 years, female 439.6
292_1 71 years, male 438.9
350_1 84 years, female 435.8
9_1 66 years, female 406.8
149_1 88 years, male 405.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

57.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 57.3
FF:10030-101E3 24-65 years, mixed 57.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

173.0
Pig sample Sample description nTPM
Retina
nTPM: 173.0
Samples: 4

Max nTPM: 189.0
Min nTPM: 160.7
Sample A Female 165.9
Sample B Female 176.2
Sample C Male 189.0
Sample D Male 160.7

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