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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:952.3 nTPM
HPA Brain:416.7 nTPM
GTEx:952.3 nTPM
FANTOM5:140.2 Scaled Tags Per Million
Pig:526.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

416.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 330.6
2565 Male, age 75, midline 408.7
1981 Female, age 72, midline 384.9
2048 Male, age 55, midline 322.9
2194 Female, age 79, both hemispheres 278.8
2816 Male, age 47, midline 257.7
Cervical spinal cord, dorsal horn
nTPM: 352.2
2173 Female, age 72, unknown 461.4
2069 Male, age 47, both hemispheres 409.1
2296 Male, age 66, both hemispheres 390.5
1877 Male, age 55, unknown 345.8
2721 Male, age 90, both hemispheres 268.1
2297 Male, age 75, both hemispheres 238.0
Cervical spinal cord, ventral horn
nTPM: 416.7
2480 Male, age 75, both hemispheres 598.8
2809 Male, age 90, both hemispheres 474.9
2098 Female, age 72, unknown 474.1
2068 Male, age 55, unknown 359.5
2295 Male, age 66, both hemispheres 350.7
2820 Female, age 79, both hemispheres 242.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

952.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 952.3
Samples: 159

Max nTPM: 1718.0
Min nTPM: 347.5
Std nTPM: 294.4
Median nTPM: 904.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1718.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1703.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1690.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1647.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1574.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1531.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1502.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1498.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1497.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1444.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1441.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1433.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1420.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1414.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1412.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1395.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1393.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1382.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1371.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1357.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1347.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1340.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1292.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1283.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1275.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1265.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1264.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1256.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1252.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1239.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1227.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1214.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1207.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1199.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1170.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1155.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1141.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1126.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1120.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1110.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1110.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1109.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1102.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1098.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1098.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1088.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1082.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1081.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1073.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1071.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1070.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1069.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1067.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1066.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1052.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1052.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1049.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1046.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1038.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1036.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1024.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1013.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1009.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1003.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1002.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1002.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 998.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 996.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 989.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 979.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 964.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 960.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 954.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 954.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 946.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 937.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 924.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 913.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 913.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 904.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 897.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 891.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 888.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 888.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 884.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 875.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 863.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 859.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 853.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 851.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 846.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 845.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 844.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 842.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 839.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 830.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 827.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 826.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 824.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 822.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 813.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 813.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 811.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 810.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 803.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 796.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 786.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 784.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 781.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 774.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 771.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 768.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 764.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 760.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 759.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 759.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 755.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 750.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 749.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 746.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 728.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 713.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 710.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 702.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 700.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 700.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 686.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 658.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 657.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 654.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 648.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 648.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 645.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 644.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 643.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 641.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 636.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 634.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 632.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 630.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 627.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 624.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 617.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 612.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 606.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 593.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 593.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 559.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 558.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 548.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 522.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 516.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 507.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 490.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 485.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 485.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 484.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 471.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 347.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

140.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 140.2
FF:10181-103D1 60 years, female 221.4
FF:10159-103A6 76 years, female 59.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

526.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 526.8
Samples: 4

Max nTPM: 727.2
Min nTPM: 399.7
Sample A Female 399.7
Sample B Female 578.6
Sample C Male 727.2
Sample D Male 401.6
Ventral spinal cord
nTPM: 460.6
Samples: 4

Max nTPM: 512.3
Min nTPM: 375.0
Sample A Female 375.0
Sample B Female 512.3
Sample C Male 499.4
Sample D Male 455.7

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