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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:54.3 nTPM
HPA Brain:286.5 nTPM
GTEx:54.3 nTPM
FANTOM5:215.0 Scaled Tags Per Million
Pig:54.3 nTPM
Mouse:96.3 nTPM
Allen mouse:21.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

286.5
Sample id Sample description nTPM
Amygdala
nTPM: 232.6
2814 Male, age 76, right hemisphere 329.8
2695 Female, age 67, right hemisphere 235.8
2517 Female, age 94, left hemisphere 232.4
1987 Female, age 91, left hemisphere 185.6
2514 Male, age 75, right hemisphere 179.1
Basal amygdala
nTPM: 286.5
2685 Female, age 94, left hemisphere 378.2
2827 Female, age 67, right hemisphere 313.4
2243 Female, age 91, right hemisphere 299.1
2110 Male, age 80, left hemisphere 256.5
1955 Male, age 76, both hemispheres 246.2
2609 Male, age 75, right hemisphere 225.7
Central amygdala
nTPM: 267.8
2826 Female, age 94, left hemisphere 338.6
2239 Male, age 80, left hemisphere 295.6
1905 Male, age 76, both hemispheres 266.1
2701 Female, age 91, right hemisphere 257.3
2515 Male, age 75, right hemisphere 181.6
Corticomedial amygdala
nTPM: 258.4
2829 Male, age 80, left hemisphere 330.0
2242 Female, age 91, right hemisphere 322.0
2535 Female, age 67, right hemisphere 307.1
2429 Female, age 94, left hemisphere 229.0
2240 Male, age 76, both hemispheres 216.6
2428 Male, age 75, right hemisphere 145.5
Lateral amygdala
nTPM: 251.3
2534 Female, age 94, left hemisphere 293.7
2256 Male, age 80, left hemisphere 281.1
2255 Female, age 91, right hemisphere 258.4
1883 Male, age 76, both hemispheres 255.5
2830 Female, age 67, right hemisphere 247.0
2516 Male, age 75, right hemisphere 172.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 54.3
Samples: 152

Max nTPM: 109.4
Min nTPM: 25.8
Std nTPM: 18.1
Median nTPM: 51.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 109.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 104.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 102.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 101.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 95.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 94.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 93.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 90.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 86.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 86.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 85.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 84.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 83.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 82.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 82.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 82.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 79.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 79.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 78.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 76.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 74.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 73.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 73.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 73.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 73.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 72.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 71.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 70.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 70.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 70.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 68.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 68.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 67.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 67.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 67.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 66.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 65.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 65.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 64.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 63.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 63.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 63.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 63.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 62.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 62.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 62.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 61.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 61.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 60.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 60.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 59.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 59.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 58.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 58.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 57.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 57.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 56.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 56.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 55.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 55.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 55.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 55.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 54.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 54.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 54.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 54.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 54.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 53.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 53.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 52.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 52.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 52.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 51.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 51.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 51.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 51.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 51.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 50.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 50.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 50.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 49.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 49.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 49.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 49.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 49.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 48.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 48.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 47.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 47.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 46.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 46.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 46.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 45.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 45.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 45.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 45.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 44.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 44.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 44.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 44.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 43.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 43.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 43.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 43.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 42.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 42.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 42.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 42.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 41.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 41.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 41.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 41.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 40.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 40.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 40.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 40.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 40.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 39.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 39.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 38.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 38.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 38.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 38.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 37.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 37.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 37.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 37.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 37.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 36.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 35.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 35.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 35.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 34.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 34.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 34.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 34.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 34.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 33.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 33.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 32.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 32.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 32.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 32.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 31.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 31.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 29.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 29.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 28.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 28.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 27.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 27.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 25.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

215.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 215.0
FF:10151-102I7 76 years, female 215.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.3
Pig sample Sample description nTPM
Amygdala
nTPM: 54.3
Samples: 4

Max nTPM: 70.4
Min nTPM: 43.3
Sample A Female 70.4
Sample B Female 43.3
Sample C Male 52.0
Sample D Male 51.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 96.3
Samples: 4

Max nTPM: 110.0
Min nTPM: 90.1
Sample A Male 94.5
Sample B Male 90.5
Sample C Female 110.0
Sample D Female 90.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.5
70429166 Antisense, RP_050614_01_B06, Mouse strain C57BL/6J (56 days, male) 21.5

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