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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:118.5 nTPM
HPA Brain:247.2 nTPM
GTEx:118.5 nTPM
FANTOM5:192.0 Scaled Tags Per Million
Pig:92.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

247.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 237.2
2565 Male, age 75, midline 297.1
2816 Male, age 47, midline 265.7
2194 Female, age 79, both hemispheres 250.4
1981 Female, age 72, midline 206.2
2048 Male, age 55, midline 166.9
Cervical spinal cord, dorsal horn
nTPM: 235.9
2721 Male, age 90, both hemispheres 280.9
2296 Male, age 66, both hemispheres 259.7
2297 Male, age 75, both hemispheres 252.7
2173 Female, age 72, unknown 236.5
1877 Male, age 55, unknown 212.7
2069 Male, age 47, both hemispheres 173.1
Cervical spinal cord, ventral horn
nTPM: 247.2
2820 Female, age 79, both hemispheres 364.4
2068 Male, age 55, unknown 272.8
2295 Male, age 66, both hemispheres 244.2
2480 Male, age 75, both hemispheres 236.3
2809 Male, age 90, both hemispheres 204.9
2098 Female, age 72, unknown 160.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

118.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 118.5
Samples: 159

Max nTPM: 251.1
Min nTPM: 49.5
Std nTPM: 39.7
Median nTPM: 114.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 251.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 228.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 224.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 215.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 205.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 203.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 202.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 202.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 200.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 194.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 188.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 180.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 176.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 176.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 175.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 172.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 169.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 165.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 163.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 161.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 159.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 156.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 156.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 155.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 155.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 152.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 152.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 151.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 151.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 151.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 150.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 150.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 150.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 149.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 148.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 147.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 145.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 143.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 143.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 143.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 142.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 141.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 140.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 140.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 140.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 139.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 139.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 138.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 137.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 135.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 135.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 134.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 134.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 133.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 132.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 131.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 131.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 129.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 128.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 128.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 127.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 127.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 126.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 125.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 124.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 124.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 123.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 121.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 120.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 120.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 119.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 119.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 118.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 118.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 118.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 118.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 116.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 116.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 116.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 114.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 113.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 112.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 111.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 108.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 108.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 108.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 106.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 106.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 105.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 105.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 105.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 104.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 104.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 103.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 103.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 103.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 102.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 102.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 100.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 100.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 98.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 98.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 97.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 97.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 97.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 97.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 96.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 96.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 95.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 94.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 93.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 93.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 92.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 92.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 92.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 91.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 90.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 90.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 90.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 89.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 89.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 89.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 88.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 88.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 87.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 85.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 85.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 84.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 83.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 81.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 81.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 79.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 79.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 77.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 77.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 77.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 77.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 76.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 74.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 74.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 73.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 72.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 71.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 70.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 70.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 69.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 68.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 67.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 65.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 64.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 64.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 64.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 58.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 56.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 55.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 54.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 52.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 52.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 49.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

192.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 192.0
FF:10181-103D1 60 years, female 217.8
FF:10159-103A6 76 years, female 166.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 68.7
Samples: 4

Max nTPM: 81.3
Min nTPM: 61.3
Sample A Female 69.5
Sample B Female 62.7
Sample C Male 61.3
Sample D Male 81.3
Ventral spinal cord
nTPM: 92.7
Samples: 4

Max nTPM: 97.1
Min nTPM: 88.3
Sample A Female 94.8
Sample B Female 88.3
Sample C Male 97.1
Sample D Male 90.6

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