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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:292.8 nTPM
HPA Brain:235.5 nTPM
GTEx:292.8 nTPM
FANTOM5:648.8 Scaled Tags Per Million
Pig:66.8 nTPM
Mouse:19.8 nTPM
Allen mouse:1.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

235.5
Sample id Sample description nTPM
Amygdala
nTPM: 235.5
2695 Female, age 67, right hemisphere 383.8
2814 Male, age 76, right hemisphere 309.6
1987 Female, age 91, left hemisphere 188.0
2517 Female, age 94, left hemisphere 155.3
2514 Male, age 75, right hemisphere 140.7
Basal amygdala
nTPM: 120.9
1955 Male, age 76, both hemispheres 207.6
2110 Male, age 80, left hemisphere 151.8
2685 Female, age 94, left hemisphere 120.1
2243 Female, age 91, right hemisphere 92.7
2827 Female, age 67, right hemisphere 85.3
2609 Male, age 75, right hemisphere 67.7
Central amygdala
nTPM: 129.9
1905 Male, age 76, both hemispheres 202.6
2701 Female, age 91, right hemisphere 148.3
2239 Male, age 80, left hemisphere 127.7
2515 Male, age 75, right hemisphere 102.3
2826 Female, age 94, left hemisphere 68.7
Corticomedial amygdala
nTPM: 115.9
2240 Male, age 76, both hemispheres 205.3
2429 Female, age 94, left hemisphere 153.7
2242 Female, age 91, right hemisphere 100.9
2535 Female, age 67, right hemisphere 83.2
2829 Male, age 80, left hemisphere 81.9
2428 Male, age 75, right hemisphere 70.2
Lateral amygdala
nTPM: 148.3
1883 Male, age 76, both hemispheres 288.1
2256 Male, age 80, left hemisphere 190.6
2255 Female, age 91, right hemisphere 115.2
2534 Female, age 94, left hemisphere 100.7
2830 Female, age 67, right hemisphere 99.1
2516 Male, age 75, right hemisphere 96.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

292.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 292.8
Samples: 152

Max nTPM: 3531.0
Min nTPM: 27.2
Std nTPM: 433.0
Median nTPM: 165.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 3531.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 2547.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 2323.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1352.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1323.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1052.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 932.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 919.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 863.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 844.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 772.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 722.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 711.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 652.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 647.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 562.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 557.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 553.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 544.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 497.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 496.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 477.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 442.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 431.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 413.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 408.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 398.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 397.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 396.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 395.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 395.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 350.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 342.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 330.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 317.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 308.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 305.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 303.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 301.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 293.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 292.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 289.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 284.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 281.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 275.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 270.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 260.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 251.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 240.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 239.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 224.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 218.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 218.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 215.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 206.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 201.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 200.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 197.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 196.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 192.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 191.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 190.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 187.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 186.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 185.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 183.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 183.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 182.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 181.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 177.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 176.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 176.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 176.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 173.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 170.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 167.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 164.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 159.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 159.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 154.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 153.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 151.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 150.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 148.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 147.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 140.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 137.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 135.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 134.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 130.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 129.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 128.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 127.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 125.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 123.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 120.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 118.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 115.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 115.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 115.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 110.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 109.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 109.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 107.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 106.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 105.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 104.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 104.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 100.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 100.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 100.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 99.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 98.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 97.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 96.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 95.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 95.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 94.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 92.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 91.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 89.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 86.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 84.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 83.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 81.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 80.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 78.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 78.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 77.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 76.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 76.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 73.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 72.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 72.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 72.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 71.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 68.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 68.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 67.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 66.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 65.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 64.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 62.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 61.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 61.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 50.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 49.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 49.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 48.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 46.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 29.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 27.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

648.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 648.8
FF:10151-102I7 76 years, female 648.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.8
Pig sample Sample description nTPM
Amygdala
nTPM: 66.8
Samples: 4

Max nTPM: 117.3
Min nTPM: 36.5
Sample A Female 52.1
Sample B Female 117.3
Sample C Male 61.3
Sample D Male 36.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

19.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 19.9
Samples: 4

Max nTPM: 26.3
Min nTPM: 14.7
Sample A Male 22.0
Sample B Male 14.7
Sample C Female 16.4
Sample D Female 26.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.4
513488 Antisense, RP_040810_01_H07, Mouse strain C57BL/6J (56 days, male) 2.5
69015350 Antisense, RP_050310_02_G08, Mouse strain C57BL/6J (56 days, male) 0.9
75651180 Antisense, RP_060518_01_C06, Mouse strain C57BL/6J (56 days, male) 0.7
70436740 Antisense, RP_050310_02_G08, Mouse strain C57BL/6J (56 days, male) 0.5

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