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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
1537.0
nTPM
FANTOM5:
2133.4
Scaled Tags Per Million
Pig:
325.6
nTPM
Allen mouse:
8.5
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1537.0
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 823.0
2188
Female, age 91, both hemispheres
983.2
2090
Male, age 80, both hemispheres
952.0
2301
Female, age 85, both hemispheres
891.7
1984
Male, age 76, both hemispheres
464.9
Dorsal cochlear nucleus nTPM: 832.6
2370
Male, age 61, both hemispheres
1700.6
2187
Female, age 91, both hemispheres
829.7
2378
Male, age 80, both hemispheres
748.9
2802
Male, age 74, right hemisphere
448.9
2058
Male, age 76, both hemispheres
435.0
Dorsal tegmental nucleus nTPM: 1537.0
2358
Male, age 61, both hemispheres
4353.2
2083
Male, age 80, both hemispheres
768.8
2326
Male, age 74, both hemispheres
637.1
1936
Male, age 76, left hemisphere
388.8
Dorsolateral tegmental area nTPM: 1033.3
2337
Male, age 61, both hemispheres
2846.8
2654
Male, age 80, both hemispheres
772.2
2751
Female, age 85, both hemispheres
743.9
2360
Male, age 74, both hemispheres
549.9
2141
Male, age 76, both hemispheres
253.7
Kolliker-Fuse nucleus nTPM: 851.7
2793
Female, age 91, left hemisphere
1232.7
2163
Male, age 80, both hemispheres
856.7
2315
Male, age 76, right hemisphere
465.7
Lateral lemniscal nuclei nTPM: 681.2
2746
Female, age 85, left hemisphere
1011.8
2320
Female, age 91, left hemisphere
703.8
2453
Male, age 74, right hemisphere
664.3
2036
Male, age 80, both hemispheres
608.6
2169
Male, age 76, both hemispheres
417.8
Lateral parabrachial nucleus nTPM: 856.8
2790
Male, age 61, both hemispheres
1009.9
2792
Male, age 76, both hemispheres
899.8
2013
Male, age 80, both hemispheres
803.7
2139
Female, age 85, right hemisphere
713.9
Lateral vestibular nucleus nTPM: 706.2
2311
Male, age 80, both hemispheres
754.3
2184
Male, age 76, both hemispheres
658.1
Locus coeruleus nTPM: 288.8
2162
Male, age 80, both hemispheres
413.3
2123
Female, age 91, both hemispheres
378.4
2720
Male, age 74, both hemispheres
362.1
2788
Male, age 74, unknown
252.8
2317
Female, age 72, unknown
250.7
1980
Male, age 76, both hemispheres
187.0
2014
Male, age 55, unknown
177.4
Medial parabrachial nucleus nTPM: 831.3
2156
Male, age 61, both hemispheres
1059.1
2854
Male, age 80, both hemispheres
1012.2
2170
Female, age 91, both hemispheres
899.4
2463
Female, age 85, right hemisphere
648.2
2786
Male, age 76, both hemispheres
537.7
Medial periolivary nuclei nTPM: 802.6
2081
Male, age 80, both hemispheres
1286.0
2791
Male, age 74, right hemisphere
861.4
2458
Female, age 91, both hemispheres
833.2
2171
Female, age 85, both hemispheres
590.2
2063
Male, age 76, both hemispheres
442.0
Motor facial nucleus nTPM: 669.0
2365
Male, age 74, right hemisphere
1230.5
2697
Female, age 85, both hemispheres
956.6
2126
Male, age 61, both hemispheres
650.7
2795
Female, age 91, both hemispheres
428.1
2327
Male, age 80, both hemispheres
396.1
2062
Male, age 76, both hemispheres
352.3
Motor trigeminal nucleus nTPM: 822.6
2335
Male, age 61, both hemispheres
1411.4
2560
Male, age 74, both hemispheres
834.8
2321
Female, age 91, both hemispheres
738.5
2079
Male, age 80, both hemispheres
678.8
2309
Male, age 76, both hemispheres
449.5
Nuclei of the trapezoid body nTPM: 467.2
2166
Male, age 80, both hemispheres
688.0
2368
Female, age 91, both hemispheres
527.7
1983
Male, age 76, both hemispheres
468.0
2735
Female, age 85, both hemispheres
412.0
2159
Male, age 61, both hemispheres
240.3
Nucleus raphe magnus nTPM: 614.7
2051
Male, age 76, both hemispheres
822.8
2455
Male, age 74, both hemispheres
763.7
2459
Female, age 91, both hemispheres
730.9
2328
Male, age 80, both hemispheres
531.5
2172
Female, age 85, both hemispheres
473.2
2160
Male, age 61, both hemispheres
366.1
Paramedian reticular nucleus nTPM: 826.9
2313
Male, age 61, both hemispheres
1115.2
2052
Male, age 76, both hemispheres
798.7
2050
Female, age 85, both hemispheres
767.8
2057
Male, age 80, both hemispheres
626.0
Pedunculopontine tegmental nucleus nTPM: 1099.8
2338
Male, age 61, both hemispheres
2342.1
2334
Male, age 80, both hemispheres
576.7
1921
Female, age 85, both hemispheres
380.6
Pontine nuclei nTPM: 853.2
2115
Male, age 80, left hemisphere
1674.4
2454
Male, age 74, left hemisphere
1040.3
2319
Female, age 91, both hemispheres
974.9
2109
Female, age 72, unknown
896.1
1863
Male, age 55, unknown
720.8
2787
Female, age 85, both hemispheres
675.0
2727
Male, age 61, right hemisphere
443.7
1968
Male, age 76, left hemisphere
400.8
Pontine raphe nucleus nTPM: 365.3
2122
Female, age 85, midline
438.8
2853
Male, age 76, midline
291.8
Posteroventral cochlear nucleus nTPM: 1065.8
2371
Male, age 61, both hemispheres
1750.2
2341
Male, age 80, both hemispheres
1315.6
2135
Female, age 91, both hemispheres
1088.0
2070
Male, age 76, both hemispheres
648.8
2752
Female, age 85, both hemispheres
526.4
Principal sensory trigeminal nucleus nTPM: 642.4
2367
Female, age 91, left hemisphere
1110.4
2324
Male, age 76, both hemispheres
571.1
2008
Male, age 80, left hemisphere
468.4
2158
Male, age 61, both hemispheres
419.7
Reticular pontine nucleus, caudal nTPM: 679.6
2559
Male, age 74, both hemispheres
909.4
2457
Female, age 91, both hemispheres
803.2
2092
Male, age 76, both hemispheres
560.3
2332
Male, age 80, right hemisphere
445.5
Reticular pontine nucleus, oral nTPM: 800.0
2361
Male, age 74, both hemispheres
1342.9
2366
Female, age 91, both hemispheres
891.1
1939
Male, age 80, both hemispheres
624.0
2012
Female, age 85, both hemispheres
607.2
2167
Male, age 76, both hemispheres
534.8
Reticulotegmental nucleus nTPM: 562.9
2333
Male, age 80, both hemispheres
657.9
2322
Female, age 91, both hemispheres
631.2
2452
Male, age 74, both hemispheres
547.1
2325
Male, age 76, both hemispheres
415.6
Spinal trigeminal nucleus, oral nTPM: 552.9
2164
Male, age 80, both hemispheres
744.6
2737
Female, age 85, both hemispheres
519.6
1978
Male, age 76, both hemispheres
394.5
Subcoeruleus area nTPM: 537.7
2369
Female, age 85, left hemisphere
911.2
1958
Male, age 80, both hemispheres
600.6
2451
Male, age 74, both hemispheres
415.5
2089
Male, age 76, left hemisphere
388.2
2323
Female, age 91, left hemisphere
372.8
Superior olive nTPM: 768.3
2364
Male, age 74, right hemisphere
1104.8
2561
Female, age 91, both hemispheres
904.3
2020
Male, age 76, both hemispheres
649.9
2329
Male, age 80, right hemisphere
597.6
1875
Female, age 85, both hemispheres
585.1
Ventral periolivary nuclei nTPM: 650.1
2023
Male, age 76, both hemispheres
746.9
2794
Female, age 91, left hemisphere
682.8
2165
Male, age 80, both hemispheres
632.8
2130
Female, age 85, both hemispheres
538.0
Ventrolateral tegmental area, A5 NE cell group nTPM: 878.8
2359
Male, age 61, both hemispheres
1148.4
2840
Female, age 85, both hemispheres
1088.1
2161
Male, age 80, both hemispheres
994.9
2449
Male, age 74, both hemispheres
843.4
2456
Female, age 91, both hemispheres
664.2
1959
Male, age 76, both hemispheres
533.5
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
325.6
Pig sample
Sample description
nTPM
Pons nTPM: 325.6
Samples: 4
Max nTPM: 530.1
Min nTPM: 233.5
Sample A
Female
233.5
Sample B
Female
242.8
Sample C
Male
295.8
Sample D
Male
530.1
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
