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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1980.6 nTPM
HPA Brain:677.3 nTPM
GTEx:1980.6 nTPM
FANTOM5:3658.7 Scaled Tags Per Million
Pig:823.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

677.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 617.4
1981 Female, age 72, midline 884.0
2048 Male, age 55, midline 631.7
2816 Male, age 47, midline 543.3
2194 Female, age 79, both hemispheres 539.0
2565 Male, age 75, midline 489.2
Cervical spinal cord, dorsal horn
nTPM: 601.4
2173 Female, age 72, unknown 1206.1
2296 Male, age 66, both hemispheres 702.8
2069 Male, age 47, both hemispheres 611.4
1877 Male, age 55, unknown 521.1
2721 Male, age 90, both hemispheres 348.9
2297 Male, age 75, both hemispheres 218.1
Cervical spinal cord, ventral horn
nTPM: 677.3
2098 Female, age 72, unknown 1028.4
2068 Male, age 55, unknown 787.2
2480 Male, age 75, both hemispheres 655.0
2809 Male, age 90, both hemispheres 581.8
2820 Female, age 79, both hemispheres 540.9
2295 Male, age 66, both hemispheres 470.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1980.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1980.6
Samples: 159

Max nTPM: 9305.7
Min nTPM: 527.2
Std nTPM: 1093.5
Median nTPM: 1739.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 9305.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 6056.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 5286.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 5268.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 5222.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 4174.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 3710.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 3658.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 3601.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 3596.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 3589.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 3565.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 3415.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 3371.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 3315.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 3293.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 3289.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 3222.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 3177.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 2970.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 2913.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2780.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 2722.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 2705.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 2669.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2642.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 2600.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 2581.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 2579.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 2563.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 2555.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 2509.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 2482.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 2469.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 2436.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2403.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 2381.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 2329.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 2324.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 2321.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 2288.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 2286.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 2236.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 2212.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 2157.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 2145.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 2143.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 2094.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 2071.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 2070.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 2066.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 2043.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2036.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 2026.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 2024.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1995.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1985.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1980.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1978.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1965.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1957.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1946.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1944.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1925.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1904.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1892.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1889.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1874.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1859.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1849.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1847.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1842.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1833.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1797.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1796.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1787.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1784.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1769.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1758.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1739.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1731.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1709.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1705.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1701.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1697.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1697.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1692.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1689.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1684.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1679.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1676.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1671.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1663.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1646.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1641.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1608.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1591.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1585.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1584.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1580.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1580.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1547.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1531.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1531.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1511.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1501.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1501.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1482.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1458.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1456.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1443.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1443.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1440.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1386.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1381.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1380.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1360.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1357.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 1337.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1323.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1305.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1274.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1267.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1264.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1259.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1259.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1251.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1236.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1228.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1218.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1215.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1192.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1190.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1157.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1138.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1130.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1119.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1113.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1108.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1077.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1071.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1044.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1038.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1018.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1010.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1008.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 971.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 909.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 906.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 832.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 828.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 822.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 731.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 650.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 649.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 647.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 618.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 561.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 527.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3658.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 3658.7
FF:10159-103A6 76 years, female 4259.4
FF:10181-103D1 60 years, female 3058.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

823.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 607.0
Samples: 4

Max nTPM: 703.0
Min nTPM: 545.9
Sample A Female 552.5
Sample B Female 703.0
Sample C Male 545.9
Sample D Male 626.6
Ventral spinal cord
nTPM: 823.3
Samples: 4

Max nTPM: 906.8
Min nTPM: 694.8
Sample A Female 825.3
Sample B Female 906.8
Sample C Male 694.8
Sample D Male 866.4

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