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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1454.9 nTPM
HPA Brain:353.6 nTPM
GTEx:1454.9 nTPM
FANTOM5:16.0 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

353.6
Sample id Sample description nTPM
Amygdala
nTPM: 353.6
2695 Female, age 67, right hemisphere 518.2
2514 Male, age 75, right hemisphere 362.5
2814 Male, age 76, right hemisphere 320.2
2517 Female, age 94, left hemisphere 300.3
1987 Female, age 91, left hemisphere 266.9
Basal amygdala
nTPM: 289.3
2827 Female, age 67, right hemisphere 452.1
2609 Male, age 75, right hemisphere 325.3
2685 Female, age 94, left hemisphere 288.4
2110 Male, age 80, left hemisphere 253.2
2243 Female, age 91, right hemisphere 216.9
1955 Male, age 76, both hemispheres 200.2
Central amygdala
nTPM: 323.9
2826 Female, age 94, left hemisphere 562.2
2515 Male, age 75, right hemisphere 338.4
2239 Male, age 80, left hemisphere 269.9
2701 Female, age 91, right hemisphere 251.8
1905 Male, age 76, both hemispheres 196.9
Corticomedial amygdala
nTPM: 267.4
2535 Female, age 67, right hemisphere 313.5
2829 Male, age 80, left hemisphere 283.9
2428 Male, age 75, right hemisphere 273.3
2240 Male, age 76, both hemispheres 269.2
2242 Female, age 91, right hemisphere 241.5
2429 Female, age 94, left hemisphere 222.9
Lateral amygdala
nTPM: 335.5
2830 Female, age 67, right hemisphere 549.9
2516 Male, age 75, right hemisphere 422.7
2534 Female, age 94, left hemisphere 366.9
2256 Male, age 80, left hemisphere 288.7
2255 Female, age 91, right hemisphere 205.4
1883 Male, age 76, both hemispheres 179.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1454.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1454.9
Samples: 152

Max nTPM: 4667.3
Min nTPM: 642.0
Std nTPM: 687.5
Median nTPM: 1278.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 4667.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 4531.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 3843.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3606.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3223.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3064.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2974.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2720.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2611.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2560.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2497.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2489.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2471.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2462.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2429.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2418.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2300.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2260.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2204.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2098.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2096.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2094.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2075.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1996.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1885.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1878.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1853.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1838.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1831.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1810.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1799.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1798.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1771.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1767.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1748.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1728.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1677.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1673.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1659.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1655.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1646.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1587.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1553.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1533.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1487.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1480.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1475.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1464.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1458.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1448.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1445.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1441.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1440.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1436.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1433.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1427.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1412.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1411.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1402.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1397.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1390.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1384.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1377.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1366.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1356.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1353.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1353.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1343.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1324.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1317.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1313.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1304.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1295.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1285.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1284.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1279.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1277.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1271.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1263.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1257.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1255.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1252.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1247.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1237.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1223.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1207.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1205.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1199.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1199.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1190.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1184.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1180.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1178.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1176.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1175.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1137.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1136.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1129.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1116.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1109.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1097.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1092.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1079.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1073.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1072.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1068.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1068.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1047.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1045.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1045.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1042.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1026.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1021.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1007.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1006.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1004.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 986.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 985.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 984.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 978.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 967.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 960.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 952.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 945.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 938.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 936.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 933.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 927.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 914.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 907.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 905.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 900.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 885.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 865.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 847.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 846.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 845.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 831.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 788.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 786.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 782.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 778.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 774.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 772.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 770.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 767.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 747.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 731.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 721.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 719.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 712.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 642.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

16.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 16.0
FF:10151-102I7 76 years, female 16.0

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