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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1363.0 nTPM
HPA Brain:399.0 nTPM
GTEx:1363.0 nTPM
FANTOM5:24.5 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

399.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 304.4
1981 Female, age 72, midline 396.2
2048 Male, age 55, midline 333.9
2565 Male, age 75, midline 328.2
2816 Male, age 47, midline 247.2
2194 Female, age 79, both hemispheres 216.8
Cervical spinal cord, dorsal horn
nTPM: 329.7
2173 Female, age 72, unknown 449.9
2069 Male, age 47, both hemispheres 367.7
2296 Male, age 66, both hemispheres 347.1
1877 Male, age 55, unknown 338.6
2721 Male, age 90, both hemispheres 247.9
2297 Male, age 75, both hemispheres 227.2
Cervical spinal cord, ventral horn
nTPM: 399.0
2480 Male, age 75, both hemispheres 550.3
2098 Female, age 72, unknown 485.1
2809 Male, age 90, both hemispheres 467.7
2068 Male, age 55, unknown 387.4
2295 Male, age 66, both hemispheres 313.5
2820 Female, age 79, both hemispheres 189.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1363.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1363.0
Samples: 159

Max nTPM: 2968.3
Min nTPM: 525.1
Std nTPM: 485.5
Median nTPM: 1281.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2968.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2739.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2582.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2572.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2459.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2455.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2445.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2346.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2308.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 2242.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2237.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2229.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 2226.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2196.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 2112.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 2027.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2015.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2009.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2004.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1991.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1974.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1962.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1936.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1915.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1909.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1891.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1814.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1813.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1809.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1805.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1766.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1744.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1741.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1724.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1710.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1709.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1695.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1665.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1644.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1632.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1624.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1619.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1608.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1602.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1571.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1570.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1537.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1520.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1520.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1509.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1500.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1490.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1485.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1483.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1434.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1429.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1409.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1408.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1403.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1386.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1384.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1383.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1371.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1370.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1366.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1364.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1349.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1347.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1339.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1337.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1337.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1316.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1311.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1310.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1307.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1307.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1303.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1283.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1282.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1281.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1276.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1273.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1265.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1247.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1224.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1221.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1206.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1206.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1192.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1191.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1183.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1178.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1176.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1174.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1157.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1156.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1155.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1151.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1146.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1126.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1125.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1123.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1119.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1119.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1117.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1115.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1112.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1103.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1090.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1084.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1066.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1060.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1028.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1028.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1027.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1021.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1014.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1014.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1013.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 999.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 998.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 998.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 990.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 989.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 981.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 975.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 954.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 948.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 937.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 931.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 928.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 924.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 915.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 903.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 902.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 902.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 895.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 894.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 875.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 872.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 854.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 844.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 816.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 788.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 781.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 780.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 779.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 770.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 766.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 752.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 743.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 737.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 729.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 728.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 704.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 629.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 595.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 567.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 525.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

24.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 24.5
FF:10181-103D1 60 years, female 28.7
FF:10159-103A6 76 years, female 20.3

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