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  • PFDN5
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:632.6 nTPM
FANTOM5:240.2 Scaled Tags Per Million
Pig:48.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA008587
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

632.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 632.6
Samples: 246

Max nTPM: 1680.3
Min nTPM: 284.9
Std nTPM: 190.6
Median nTPM: 586.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1680.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1335.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1273.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1242.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1179.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1160.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1131.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1105.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 1096.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1049.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 1044.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1041.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1014.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1010.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1010.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 973.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 973.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 952.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 948.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 924.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 902.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 899.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 897.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 896.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 888.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 864.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 855.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 848.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 830.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 829.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 826.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 818.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 817.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 804.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 802.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 795.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 787.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 781.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 780.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 779.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 776.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 774.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 774.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 771.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 766.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 766.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 766.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 761.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 759.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 756.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 755.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 752.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 751.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 748.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 742.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 741.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 734.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 733.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 728.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 725.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 724.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 724.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 721.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 716.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 714.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 697.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 694.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 693.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 684.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 681.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 679.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 671.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 669.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 668.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 665.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 662.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 659.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 658.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 656.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 656.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 655.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 652.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 652.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 650.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 649.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 648.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 646.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 645.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 640.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 636.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 634.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 632.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 632.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 632.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 631.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 631.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 628.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 625.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 625.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 625.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 624.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 623.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 617.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 614.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 606.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 606.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 603.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 601.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 600.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 600.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 600.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 599.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 597.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 595.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 591.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 591.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 590.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 590.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 589.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 588.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 587.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 587.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 586.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 586.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 583.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 583.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 582.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 581.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 576.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 575.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 574.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 574.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 572.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 571.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 569.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 569.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 569.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 568.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 568.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 564.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 563.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 562.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 560.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 559.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 559.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 558.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 557.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 557.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 556.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 555.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 554.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 554.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 553.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 552.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 551.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 551.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 550.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 549.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 549.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 544.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 537.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 532.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 532.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 530.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 529.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 529.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 528.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 527.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 526.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 526.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 525.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 525.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 523.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 519.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 519.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 518.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 517.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 516.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 511.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 510.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 509.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 508.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 507.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 506.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 506.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 504.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 504.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 503.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 499.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 498.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 497.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 493.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 489.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 485.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 484.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 481.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 480.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 480.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 479.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 479.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 478.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 478.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 477.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 474.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 474.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 474.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 471.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 471.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 470.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 469.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 466.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 464.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 463.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 462.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 460.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 459.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 459.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 456.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 456.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 454.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 451.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 450.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 448.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 443.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 436.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 434.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 434.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 431.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 430.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 430.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 426.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 426.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 426.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 425.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 421.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 417.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 416.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 407.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 402.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 402.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 400.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 398.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 397.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 390.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 381.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 284.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

240.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 240.2
FF:10164-103B2 76 years, female 240.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.8
Pig sample Sample description nTPM
Caudate
nTPM: 48.8
Samples: 4

Max nTPM: 51.7
Min nTPM: 45.7
Sample A Female 47.7
Sample B Female 50.2
Sample C Male 51.7
Sample D Male 45.7

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